View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_1 (Length: 825)
Name: NF21526_low_1
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 617; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 105 - 810
Target Start/End: Complemental strand, 32059983 - 32059279
Alignment:
| Q |
105 |
gatctgctccgaatcgatcaaacttgcaccattactttagtttatttaatgaaaacggttacacgtacaatatatattgcattttagttttaatgagtga |
204 |
Q |
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| T |
32059983 |
gatctgttccgaatcgatcaaacttggaccattactttagtttatttaatgaaaacggttacacgtacactatatattgcattttagttttaatgagtga |
32059884 |
T |
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| Q |
205 |
aaattgtatagagatggcttattgaaaaagtaattggacttttaatagaattttgaatcaaggcaaacttttgtgaatatgtcctgcgaaaaggccacat |
304 |
Q |
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| T |
32059883 |
aaattgtatatcgatggcttattgaaaaagtaattggacttttaatagaattttgaatcaaggcaaacttttgtgaatatgtcctgcgaaaaggccacat |
32059784 |
T |
|
| Q |
305 |
tatatgttatgcttatcaaattttgttggtgcagaaaattagccaactcttgcttaatattgcacatctgaatgaagccttatcatcacgtcgcaaggtt |
404 |
Q |
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| T |
32059783 |
tatatgttatgcttatcaaattttgttggtgcagaaaattagccaactcttgcttaatattgcacatctgaatgaagccttatcatcacgtcgcaaggtt |
32059684 |
T |
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| Q |
405 |
caggtgcatcgaattagtggctgatgatattgcagagtcaaccaatattggtaaatttgcgacatattcatcttgaattttttggctacatgttgtaaag |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32059683 |
caggtgcatcgaattagtggctgatgatattgcagagtcaaccaatattggtaaatttgcgacatattcatcttgaaatttttggctacatgttgtaaag |
32059584 |
T |
|
| Q |
505 |
tgtatgagtttggtactctatacctgcatattaccgtaattaaaatcttagtaaataatctaccnnnnnnnnnnntcttagtaaataaatagcactgtat |
604 |
Q |
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| T |
32059583 |
tgtatgagtttggtactctatacctgcatattaccgtaattaaaatcttaataaataatctacc--aaaaaaaaatcttagtaaataaatagcattgtat |
32059486 |
T |
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| Q |
605 |
cactattacaatttgcaggcaacataagcatatatatttagctatatttttcttaactttggctttttgtcctgaattaattctctagtacaagttttgt |
704 |
Q |
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| T |
32059485 |
cactattacaatttgcaggcaacataagcatatatatttagctatatttttcttaactttggctttttgtcctgaattaattctctagtacaagttttgt |
32059386 |
T |
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| Q |
705 |
attagtacttgtaacttatgattaaggacattttcttatgtaataataacaaatctcaaaga-gaggcaactcttacactcaaataaccacttatattga |
803 |
Q |
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| T |
32059385 |
attagtacttgtaacttataattaaggacattttcttatgtaataataacaaatctcaaagacgaggcaactcttacactcaagtaaccatttatattga |
32059286 |
T |
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| Q |
804 |
atacatt |
810 |
Q |
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||||||| |
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| T |
32059285 |
atacatt |
32059279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 32060164 - 32060252
Alignment:
| Q |
19 |
tttgactcacttgagtgtttgctcttagtccaacatgatgattcattgggctcccctcatgactcaacaatggtatcaaaactaatgat |
107 |
Q |
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| T |
32060164 |
tttgactcacttgagtgtttgctcttggtccaacatgatgatttactgggctcccctcgtgactcaacaatggtatcaaaactaatgat |
32060252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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