View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_12 (Length: 392)
Name: NF21526_low_12
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 162 - 376
Target Start/End: Original strand, 36835480 - 36835694
Alignment:
| Q |
162 |
gccgggattccacagcatattcctgggaatgttccatttaatctataatggagtaatcattaacctattcaatactactataatggtagtaataattatg |
261 |
Q |
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| T |
36835480 |
gccgggattccacagcatattcctgggaatgttccatttaatctataatggagtaatcattaacctattcaatactactataatggtaataataattatg |
36835579 |
T |
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| Q |
262 |
aagtatttagattaacaatcattttaacttgttaatttcaaaactataccacagctaaactattgttttttaaaggagctaaactcatttttatagcttt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36835580 |
aagtatttagattaacaatcattttaacttgttaatttcaaaactataccacagctaaactattgttttttaaaggagctaaactcatttttatagcttt |
36835679 |
T |
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| Q |
362 |
ctttgatgaaaatgt |
376 |
Q |
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||||||||||||||| |
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| T |
36835680 |
ctttgatgaaaatgt |
36835694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 36835319 - 36835399
Alignment:
| Q |
1 |
aaaaacgaagaaagtagtaaaagcattaatgtatgtggcgcatagccctcgtgttacttaccatcatcatcaataatttta |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36835319 |
aaaaacgaagaaagtagtaaaagcattaatgtatgtggcgcatagccctcgtgttacttaccatcatcatcaataatttta |
36835399 |
T |
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