View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_17 (Length: 280)
Name: NF21526_low_17
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 16000172 - 16000430
Alignment:
| Q |
11 |
atacttgagttttagtttctttgtatcccttggtttaatttttagtgtgaaaattgggaaataaagcataataattgatagaatctaagttcttagcatg |
110 |
Q |
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| T |
16000172 |
atacttgagttttagtttctttgtatcccttggtttaatttttagtgtgaaaattgggaaataaagcataataattgatagaatctaagttcttagcatg |
16000271 |
T |
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| Q |
111 |
tggatgttgaagagtcaaaagatttatgtgcttctgagtttgtttttccttgtacaggattattatagtgcataaaatggaaaccattgtccttgattct |
210 |
Q |
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| T |
16000272 |
tggatgttgaagagtcaaaagatttatgtgcttctgagtttgtttttccttgtacaggattattatagtgcataaaatggaaaccattgtccttgattct |
16000371 |
T |
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| Q |
211 |
caaatcattgggaatccaaagtcatttgtggatccagaattaccaattgtagaaaatga |
269 |
Q |
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| T |
16000372 |
caaatcattgggaatccaaagtcatttgtggatccagaattaccaatggtagaaaatga |
16000430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 131 - 255
Target Start/End: Complemental strand, 18102737 - 18102613
Alignment:
| Q |
131 |
gatttatgtgcttctgagtttgtttttccttgtacaggattattatagtgcataaaatggaaaccattgtccttgattctcaaatcattgggaatccaaa |
230 |
Q |
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| T |
18102737 |
gattcatgtgcttctgtgtttgtttttccttgtgcaggattattatggtgcttaacatggaaaccataatacctgattgtgaaatcattgggaatccaaa |
18102638 |
T |
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| Q |
231 |
gtcatttgtggatccagaattacca |
255 |
Q |
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| T |
18102637 |
gtcatttgtggattcagagttacca |
18102613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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