View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_18 (Length: 250)
Name: NF21526_low_18
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_18 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 51937689 - 51937533
Alignment:
| Q |
82 |
ataatctctgatcattgcatgtaatattttttggtttaatttgtatatacttacttcttcaattacatatttaattatagagctgtatgaacaagcgata |
181 |
Q |
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| T |
51937689 |
ataatctctgatcattgcatgtaatattttttggtttaatttgtatatacttacttcttcaatta------------tagagctgtatgaacaagcgata |
51937602 |
T |
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| Q |
182 |
aagtacgaaaagggttcattcataacagcaacgggtgcgttagccactctttcaggagcaaagacagga |
250 |
Q |
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| T |
51937601 |
aagtacgaaaagggttcattcataacagcaacgggtgcgttagccactctttcaggagcaaagacagga |
51937533 |
T |
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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 51937834 - 51937759
Alignment:
| Q |
9 |
agcaaagggagtagttcacacgtggatcatcaccagcatagtcctcttatttcaacagcatttgatgttagtgata |
84 |
Q |
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| T |
51937834 |
agcaaagggagtagttcacacgtggatcatcaccagcatagtcctcttatttcaacagcatttgatgttagtgata |
51937759 |
T |
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