View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_19 (Length: 245)
Name: NF21526_low_19
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13532253 - 13532473
Alignment:
| Q |
1 |
taggcaagtttttagcaattcttttcacaactccgtggttgagtttagtcggcaacaaacaaatgaggttgatcatcaaatagcagcctcattaaacact |
100 |
Q |
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| T |
13532253 |
taggcaagtttttagcaattcttttcacaactccacggttgagtttagtcggcaacaaacaaatgagattgatcatcaaatatcagcctcattaaacgct |
13532352 |
T |
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| Q |
101 |
atttgatgatcaatgactttttagaaa--nnnnnnnnatgatcaatgacttattatataatgaaatgctatgaatttctt-aaaaaataaatagataatt |
197 |
Q |
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|||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||| |||||| |||||||||||| |
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| T |
13532353 |
atttgatgatcaatgactttttagcaattttttttttatgatcgatgacttatta-------------tatgaatttcttaaaaaaaaaaatagataatt |
13532439 |
T |
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| Q |
198 |
tacatttgaatcctttttatttatattaaatttg |
231 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
13532440 |
tacatttgaatcctttttatttatattaaatttg |
13532473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13621793 - 13622013
Alignment:
| Q |
1 |
taggcaagtttttagcaattcttttcacaactccgtggttgagtttagtcggcaacaaacaaatgaggttgatcatcaaatagcagcctcattaaacact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || |
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| T |
13621793 |
taggcaagtttttagcaattcttttcacaactccacggttgagtttagtcggcaacaaacaaatgagattgatcatcaaatatcagcctcattaaacgct |
13621892 |
T |
|
| Q |
101 |
atttgatgatcaatgactttttagaaa--nnnnnnnnatgatcaatgacttattatataatgaaatgctatgaatttctt-aaaaaataaatagataatt |
197 |
Q |
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|||||||||||||||||||||||| || |||||| ||||||||||| |||||||||||| |||||| |||||||||||| |
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| T |
13621893 |
atttgatgatcaatgactttttagcaattttttttttatgatcgatgacttatta-------------tatgaatttcttaaaaaaaaaaatagataatt |
13621979 |
T |
|
| Q |
198 |
tacatttgaatcctttttatttatattaaatttg |
231 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
13621980 |
tacatttgaatcctttttatttatattaaatttg |
13622013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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