View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21526_low_2 (Length: 738)

Name: NF21526_low_2
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21526_low_2
NF21526_low_2
[»] chr7 (1 HSPs)
chr7 (17-730)||(7805081-7805780)
[»] chr8 (2 HSPs)
chr8 (487-730)||(37080736-37080965)
chr8 (567-677)||(35739661-35739771)
[»] chr1 (7 HSPs)
chr1 (493-677)||(3722441-3722626)
chr1 (512-661)||(32953593-32953742)
chr1 (261-360)||(31393823-31393922)
chr1 (23-88)||(31393717-31393782)
chr1 (184-228)||(46129464-46129509)
chr1 (38-102)||(46129446-46129510)
chr1 (175-260)||(31393724-31393806)
[»] chr2 (2 HSPs)
chr2 (539-724)||(36033602-36033789)
chr2 (471-516)||(37794638-37794683)
[»] scaffold0011 (1 HSPs)
scaffold0011 (578-675)||(228881-228978)
[»] chr5 (2 HSPs)
chr5 (492-730)||(27983541-27983785)
chr5 (509-572)||(41968991-41969054)
[»] chr4 (2 HSPs)
chr4 (474-516)||(25968137-25968179)
chr4 (471-516)||(28147120-28147165)
[»] scaffold0004 (1 HSPs)
scaffold0004 (190-227)||(337202-337239)
[»] chr6 (1 HSPs)
chr6 (600-661)||(29521797-29521858)


Alignment Details
Target: chr7 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 17 - 730
Target Start/End: Original strand, 7805081 - 7805780
Alignment:
Q  17 acatagtgccggtaaagccttagatacaataaagcaatattttaccataactgcctcataattttattataacttaattgagaaaacaaaaattgttcac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  7805081 acatagtgccggtaaagccttagatacaataaagcaatattttaccataactgcgtcataattttattataacttaattgagaaaacaaaaatggttcac 7805180  T
Q  117 tttagctactgtaaatactatcgggcatgagggtacgcaatagcattcacctgctgacaaagtgtttgatataataaacaatactttaccggaaatgcct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7805181 tttagctactgtaaatactatcgggcatgagggtacgcaatagcattcacctgctgacaaagtgtttgatataataaacaatactttaccggaaatgcct 7805280  T
Q  217 cacaattttatttattataatatgattaatcacacattaatggtactgattactcaaaatatcaacataatcatgtcattattttatttaataacaacca 316  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7805281 cacaatttcatttattataatatgattaatcacacattaatggtactgattactcaaaatatcaacataatcatgtcattattttatttaataacaaccg 7805380  T
Q  317 accttatctacctttcaaaatctgaacgttaaactatcattaaaaaattaactaagaataaattcacactaatgaaggtttaaaataacggtcgtggaca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7805381 accttatctacctttcaaaatctgaacgttaaactatcattaaaaaattaactaagaataaattcacactaatgaaggttttaaataacggtcgtggaca 7805480  T
Q  417 tggtcgcggtcgcgttattgttggcgtgatttcagctgttgcggatactgttcaacagattgcggttatcgcggtgtgaattaatcagaacgttgcacaa 516  Q
     |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7805481 cggtcgcggtcgcgttattgttgtcgtgatttcagctgttgctgatactgttcaacagattgcggttatcgcggtgtgaattaatcagaacgttgcacaa 7805580  T
Q  517 ttaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaagcaactacg 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7805581 ttaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaagcaactacg 7805680  T
Q  617 aattcataaacaccaaaaatcccatctctaaaatccaaactcacacaaccatattcacacagacactcgactcaaagttcaaattctttttctctttaaa 716  Q
    |||||||||||||||||||||||||||||||| |||||||              |||||||||||||||||||||||||| |||||||||||||||||||    
T  7805681 aattcataaacaccaaaaatcccatctctaaagtccaaac--------------tcacacagacactcgactcaaagttccaattctttttctctttaaa 7805766  T

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Target: chr8 (Bit Score: 85; Significance: 4e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 487 - 730
Target Start/End: Original strand, 37080736 - 37080965
Alignment:
Q  487 gcggtgtgaattaatcagaacgttgcacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttcc 586  Q
    ||||||||||||||| | ||||||||||||||||||||||||||          ||||||||||||||||||| |         ||||||||||||||||    
T  37080736 gcggtgtgaattaattaaaacgttgcacaattaccctcaccact----------cacctcactttattatttcca---------ttcaaacttcttttcc 37080816  T
Q  587 aatgtcacgatactgaagcaagcaactacgaattcataaacaccaaaaatcccatctctaaaatccaaa--ctcacacaaccatattcacacagacactc 684  Q
    | |||||| ||||||||||||||||| || |||||||||||||||| |||| |||||||||| ||  ||  ||| || ||||||||||||||||||||||    
T  37080817 attgtcacaatactgaagcaagcaaccacaaattcataaacaccaataatctcatctctaaagtctgaactctctcagaaccatattcacacagacactc 37080916  T
Q  685 gactcaaagttcaaa---ttctttttctctttaaaatctcatttcatct 730  Q
    ||||| ||||||  |   || ||||||||||||||||||||||||||||    
T  37080917 gactcgaagttcctatttttttttttctctttaaaatctcatttcatct 37080965  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 567 - 677
Target Start/End: Complemental strand, 35739771 - 35739661
Alignment:
Q  567 ttctttcaaacttcttttccaatgtcacgatactgaagcaagcaactacgaattcataaacaccaaaaatcccatctctaaaatccaaactcacacaacc 666  Q
    ||||||| ||||||||||||||||||||   ||||||||| | ||| || ||||||||||||  ||||||| |||||||||| |||||||||||||||||    
T  35739771 ttctttctaacttcttttccaatgtcacagaactgaagcatggaaccacaaattcataaacataaaaaatctcatctctaaagtccaaactcacacaacc 35739672  T
Q  667 atattcacaca 677  Q
    |||||||||||    
T  35739671 atattcacaca 35739661  T

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Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 493 - 677
Target Start/End: Original strand, 3722441 - 3722626
Alignment:
Q  493 tgaattaatcagaacgttgcacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtc 592  Q
    ||||||||||| ||| |||||||||||||||||||| || |||| ||||||||||| ||||| |||  |||||||||||||  |||||||||||||||||    
T  3722441 tgaattaatcaaaacattgcacaattaccctcaccatttcctctcactcacctcacattattctttataggttcttctttctcacttcttttccaatgtc 3722540  T
Q  593 acgatactgaagcaagcaactacgaattcataaaca-ccaaaaatcccatctctaaaatccaaactcacacaaccatattcacaca 677  Q
    ||| ||| |||  | | ||| || ||||||||||||   ||||||| |||||||||| |||||||| |||||||||||||||||||    
T  3722541 acggtaccgaattatggaaccactaattcataaacataaaaaaatctcatctctaaagtccaaactaacacaaccatattcacaca 3722626  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 512 - 661
Target Start/End: Complemental strand, 32953742 - 32953593
Alignment:
Q  512 cacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaagcaa 611  Q
    |||||||||| |||||| || |||| ||||||| ||||||||| |||| ||||| | |||||  |||| |||| ||||||||| ||| |||| |||||||    
T  32953742 cacaattaccttcaccagttactctcactcaccccactttattctttccaggttttactttcttacttatttttcaatgtcacaatattgaaacaagcaa 32953643  T
Q  612 ctacgaattcataaacaccaaaaatcccatctctaaaatccaaactcaca 661  Q
    | |||||||||||||||||||||||| |||||||| | ||| ||||||||    
T  32953642 caacgaattcataaacaccaaaaatctcatctctatagtccgaactcaca 32953593  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 261 - 360
Target Start/End: Original strand, 31393823 - 31393922
Alignment:
Q  261 actgattactcaaaatatcaacataatcatgtcattattttatttaataacaaccaaccttatctacctttcaaaatctgaacgttaaactatcattaaa 360  Q
    ||||||||||| ||  ||||||||||||||| ||||| ||||||||||||||||  ||| | |||| ||||  ||||||||| |||||||||||||||||    
T  31393823 actgattactctaaccatcaacataatcatgccattaatttatttaataacaactgaccatttctatctttagaaatctgaatgttaaactatcattaaa 31393922  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 31393717 - 31393782
Alignment:
Q  23 tgccggtaaagccttagatacaataaagcaatattttaccataactgcctcataattttattataa 88  Q
    |||||||||||| ||||||| |||||| ||||| ||||||  |||||||||| |||||||||||||    
T  31393717 tgccggtaaagcgttagatataataaaacaatactttaccggaactgcctcacaattttattataa 31393782  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 46129509 - 46129464
Alignment:
Q  184 gatataataaa-caatactttaccggaaatgcctcacaattttatt 228  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||    
T  46129509 gatataataaaacaatactttaccggaactgcctcacaattttatt 46129464  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 46129510 - 46129446
Alignment:
Q  38 agatacaataaagcaatattttaccataactgcctcataattttattataacttaattgagaaaa 102  Q
    ||||| |||||| ||||| ||||||  |||||||||| ||||||||||||| |||| ||||||||    
T  46129510 agatataataaaacaatactttaccggaactgcctcacaattttattataatttaactgagaaaa 46129446  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 31393724 - 31393806
Alignment:
Q  175 aaagtgtttgatataataaa-caatactttaccggaaatgcctcacaattttatttattataatatgattaatcacacattaatggt 260  Q
    |||| ||| ||||||||||| |||||||||||||||| |||||||||||    ||||||||||||| | | | |||||| |||||||    
T  31393724 aaagcgttagatataataaaacaatactttaccggaactgcctcacaat----tttattataatataactgagcacacaataatggt 31393806  T

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Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 539 - 724
Target Start/End: Complemental strand, 36033789 - 36033602
Alignment:
Q  539 ctcacctcactttattatttcgaggttcttctttcaaacttcttttccaatgtcacgatactgaagcaagcaactacgaattcataaacaccaaaaatcc 638  Q
    |||||| ||||||||| |||| ||||||| ||| |  ||||||||| |||||||||  |||||||||||||||| ||||||||||||||| ||||||||     
T  36033789 ctcaccccactttattctttccaggttctacttactcacttctttttcaatgtcacattactgaagcaagcaaccacgaattcataaaca-caaaaatct 36033691  T
Q  639 catctctaaaatccaaactcacacaaccatattcacac----agacactcgactcaaagtt-caaattctttttctctttaaaatctcatt 724  Q
    |||||||| | ||| ||||  |||||||||||||||||    | |||||| |||||| ||| ||| || ||||||||| ||||||||||||    
T  36033690 catctctatagtccgaact--cacaaccatattcacacaaagacacactcaactcaatgttccaacttttttttctctctaaaatctcatt 36033602  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 516
Target Start/End: Original strand, 37794638 - 37794683
Alignment:
Q  471 acagattgcggttatcgcggtgtgaattaatcagaacgttgcacaa 516  Q
    ||||||||||||| ||| ||||||||||||||| ||| ||||||||    
T  37794638 acagattgcggttgtcgtggtgtgaattaatcacaacattgcacaa 37794683  T

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Target: scaffold0011 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 578 - 675
Target Start/End: Original strand, 228881 - 228978
Alignment:
Q  578 ttcttttccaatgtcacgatactgaagcaagcaactacgaattcataaacaccaaaaatcccatctctaaaatccaaactcacacaaccatattcaca 675  Q
    |||||||||||||||||  |||| ||||||||||| ||| |||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||    
T  228881 ttcttttccaatgtcactgtactaaagcaagcaaccacggattcataaacaccaaatatctcatctctaaagtccgaactcacacaaccatattcaca 228978  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 492 - 730
Target Start/End: Original strand, 27983541 - 27983785
Alignment:
Q  492 gtgaattaatcagaacgttgcacaatta---ccctcaccactttctctaactcacctcactttattatttcgaggttcttctttcaaacttcttttccaa 588  Q
    |||||||||||| ||| |||||||||||   |||||||||||| |||| | ||| | | ||||||| |||  ||||| | |||||  ||| |||||||||    
T  27983541 gtgaattaatcacaacattgcacaattatccccctcaccacttactctcagtcaacccgctttattctttgcaggttttactttcttact-cttttccaa 27983639  T
Q  589 tgtcacgatactgaagcaagcaactacgaattcataaa-caccaaaaatcccatctctaaaatccaaactcacacaaccatattcacac----agacact 683  Q
    ||||||  || ||||||||||||| ||||| ||||||| ||| |||  || |||||||||| ||||||||  |||||||||||||||||    | |||||    
T  27983640 tgtcacattattgaagcaagcaaccacgaactcataaatcactaaagttctcatctctaaagtccaaact--cacaaccatattcacacaaagacacact 27983737  T
Q  684 cgactcaaagtt-caaattctttttctctttaaaatctcatttcatct 730  Q
    | |||||||||| ||| || ||||||||| ||||||||||||||||||    
T  27983738 caactcaaagttccaacttttttttctctctaaaatctcatttcatct 27983785  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 572
Target Start/End: Complemental strand, 41969054 - 41968991
Alignment:
Q  509 ttgcacaattaccctcaccactttctctaactcacctcactttattatttcgaggttcttcttt 572  Q
    |||||||||||||||||||| || |||  |||||||||||||||||  ||  ||||||||||||    
T  41969054 ttgcacaattaccctcaccatttactcccactcacctcactttattcgttataggttcttcttt 41968991  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 474 - 516
Target Start/End: Complemental strand, 25968179 - 25968137
Alignment:
Q  474 gattgcggttatcgcggtgtgaattaatcagaacgttgcacaa 516  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||    
T  25968179 gattgcggttgtcgcggtgtgaattaatcacaacattgcacaa 25968137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 516
Target Start/End: Complemental strand, 28147165 - 28147120
Alignment:
Q  471 acagattgcggttatcgcggtgtgaattaatcagaacgttgcacaa 516  Q
    ||||| ||||||| ||||||||||||||||||| ||| ||||||||    
T  28147165 acagagtgcggttgtcgcggtgtgaattaatcacaacattgcacaa 28147120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 337239 - 337202
Alignment:
Q  190 ataaacaatactttaccggaaatgcctcacaattttat 227  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  337239 ataaacaatactttaccggagctgcctcacaattttat 337202  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 661
Target Start/End: Original strand, 29521797 - 29521858
Alignment:
Q  600 tgaagcaagcaactacgaattcataaacaccaaaaatcccatctctaaaatccaaactcaca 661  Q
    ||||||||| ||| | |||||||||||||  ||||||| ||||||||||| |||| ||||||    
T  29521797 tgaagcaaggaaccatgaattcataaacatgaaaaatctcatctctaaaacccaagctcaca 29521858  T

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