View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_20 (Length: 239)
Name: NF21526_low_20
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 16825452 - 16825274
Alignment:
| Q |
43 |
ggtagtaataataatgagaagacttactatgagttcaataactgcacttatcaagtagacatgataagtggtgagaaatgcatcagacaagaaaccacca |
142 |
Q |
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| T |
16825452 |
ggtagtaataataatgagaagacttactatgagttcaataactgcacttatcaagtagacatgataagtggtgagaaatgcatcagacaagaaaccacca |
16825353 |
T |
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| Q |
143 |
agtagagcaagtagaaatgatgttcccataaaatttgtgacattgttggctgattttgaaggagacatatgcatatact |
221 |
Q |
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| T |
16825352 |
agtagagcaagtagaaatgatgttcccataaaatttgtgacattgttggctgatttagaaggagacatatgcatatact |
16825274 |
T |
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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 25177198 - 25177322
Alignment:
| Q |
77 |
tcaataactgcacttatcaagtagacatgataagtggtgagaaatgcatcagacaagaaaccaccaagtagagcaagtagaaatgatgttcccataaaat |
176 |
Q |
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||||||||||||||||||| ||||| |||||||| |||| |||||||||||| || ||||||||||| | |||||| ||||| | ||||||||| |||| |
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| T |
25177198 |
tcaataactgcacttatcaggtagatgtgataagttgtgaaaaatgcatcagataaaaaaccaccaagcaaagcaagaagaaaagctgttcccatgaaat |
25177297 |
T |
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| Q |
177 |
ttgtgacattgttggctgattttga |
201 |
Q |
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|||| |||||||| || |||||||| |
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| T |
25177298 |
ttgtcacattgttagcagattttga |
25177322 |
T |
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