View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_21 (Length: 237)
Name: NF21526_low_21
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 5720638 - 5720432
Alignment:
| Q |
18 |
tatccattatgtatttttgtctagtaacttatccttttaaaagaaagttagaaaccaaaacttcctttcttaatacaatgaatataagcacaaatcaaga |
117 |
Q |
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| T |
5720638 |
tatccattatgtatttttgtctagtaacttatccttttaaaagaaagttagaaaccaaaacttcctttcttaatacaatgaatataagcacaaatcaaga |
5720539 |
T |
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| Q |
118 |
ccgagttaagaaactgggatcaattatccttctaaggaacatttgtttttcggaagacttggtnnnnnnncatacacttttcaatcatcgatcacattga |
217 |
Q |
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| T |
5720538 |
ccgagttaagaaactgggatcaattatccttctaaggaacatttgtttttcggaagacttggt-aaaaaacatacacttttcaatcatcgatcacattga |
5720440 |
T |
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| Q |
218 |
tatctgtg |
225 |
Q |
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| T |
5720439 |
catctgtg |
5720432 |
T |
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