View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_22 (Length: 230)
Name: NF21526_low_22
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_22 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 13531937 - 13532112
Alignment:
| Q |
55 |
acttaagacgtttggataattggaactcgatatagaacatcaaagctccctcgtaggtccaaaatcttgtttggatgagtcttttcctacacgggcgcac |
154 |
Q |
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| T |
13531937 |
acttaagacgtttggatcattggaactcgatatagaacatcaaagctccctcgtaggtccaaaatcttgtttggatgaatcttttcctacacgagcgcgc |
13532036 |
T |
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| Q |
155 |
cttgttagtagaggagttacttgccccactgagtgtgttatttgttgttctctccattatgttaggcgaagcaatg |
230 |
Q |
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| T |
13532037 |
cttgttagtagaggagttacttgccccactgagtgtgttatttgttgttctctccattatgttaggcgaagcaatg |
13532112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 13621476 - 13621652
Alignment:
| Q |
55 |
acttaagacgtttggataattggaactcgatatagaacatcaaagctccctcgtaggtccaaaatcttgtttggatgagtcttttcctacacgggcgcac |
154 |
Q |
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| T |
13621476 |
acttaagacgtttggatcattggaactcgatatagaacatcaaagctccctcgtaggtccaaaatcttgtttggatgaatcttttcctacacgagcgcgc |
13621575 |
T |
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| Q |
155 |
cttgttagtagaggagttacttgccccactgagtgtgttatttgttgttctct-ccattatgttaggcgaagcaatg |
230 |
Q |
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| T |
13621576 |
cttgttagtagaggagttacttgccccactgagtgtgttgattgttggtctctcccattatgttaggcgaagcaatg |
13621652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 9513848 - 9513911
Alignment:
| Q |
136 |
ttttcctacacgggcgcaccttgttagtagaggagttacttgccccactgagtgtgttatttgt |
199 |
Q |
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| T |
9513848 |
ttttcctacacgtgtgtgccttgttagtagaggagttacttgtcccactgagtgtgttgtttgt |
9513911 |
T |
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