View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_24 (Length: 201)
Name: NF21526_low_24
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 27436986 - 27436816
Alignment:
| Q |
17 |
caaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccaagtatgtctgcatgtataccgcgtttattgcaactgcatttgtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27436986 |
caaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgtatgtctgcatgtataccgcgtttattgcagctgcatttgtg |
27436887 |
T |
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| Q |
117 |
aacatttgaattagacaattataagaaaataatagtaataataattacaattcaaattgtttagagtatta |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27436886 |
aacatttgaattagacaattataagaaaataatagtaataataattacaattcaaattgtttagagtatta |
27436816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 27945478 - 27945308
Alignment:
| Q |
17 |
caaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccaagtatgtctgcatgtataccgcgtttattgcaactgcatttgtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27945478 |
caaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgtatgtctgcatgtataccgcgtttattgcagctgcatttgtg |
27945379 |
T |
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| Q |
117 |
aacatttgaattagacaattataagaaaataatagtaataataattacaattcaaattgtttagagtatta |
187 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27945378 |
aacatttgaattagacaattataagaaaataatagtaataataattacaattcaaattgtttagagtatta |
27945308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 27549231 - 27549392
Alignment:
| Q |
17 |
caaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccaagtatgtctgcatgtataccgcgtttattgcaactgcatttgtg |
116 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||| |||| ||||||| |||||||||||||||| |||| ||||| ||||||||||||||| |
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| T |
27549231 |
caaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgtctgcatgtatgccgcatttatggcaactgcatttgtg |
27549330 |
T |
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| Q |
117 |
aacatttgaattagacaattataag-aaaataatagtaataataattacaattcaaattgtt |
177 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
27549331 |
aacatttgaattagataattataagtaaaataatagtaataataattataattcaaattgtt |
27549392 |
T |
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