View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21526_low_4 (Length: 614)

Name: NF21526_low_4
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21526_low_4
NF21526_low_4
[»] scaffold0268 (1 HSPs)
scaffold0268 (15-597)||(22631-23213)
[»] chr7 (1 HSPs)
chr7 (15-597)||(10196875-10197457)
[»] chr1 (1 HSPs)
chr1 (17-588)||(19457151-19457722)
[»] chr8 (2 HSPs)
chr8 (15-597)||(25025367-25025949)
chr8 (15-72)||(42307838-42307895)
[»] chr6 (1 HSPs)
chr6 (15-115)||(682675-682775)


Alignment Details
Target: scaffold0268 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 15 - 597
Target Start/End: Complemental strand, 23213 - 22631
Alignment:
Q  15 tataaaccttttcacagccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaagg 114  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23213 tataaaccttttcacaaccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccattcatcccaaccaacgcgcaagg 23114  T
Q  115 aagcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagtataac 214  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23113 aagtgctttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttcttttgtagaagtgagtataac 23014  T
Q  215 aaacaagcaaaatcacagtgtagaccttcatcgtgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttttcaaccagaaaatcg 314  Q
    |||||||||||||||||||| |||||||| ||  |||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||    
T  23013 aaacaagcaaaatcacagtgcagaccttcgtcacgtgaaataagctcgtttgagaatgttaaccctggcattaaaccgcgctttttcaaccagaaaatcg 22914  T
Q  315 cgcagaagcttccagagaagaaaattccttctacacaagcaaatgcaacaattctttcagcaaaagaatcgcttgaatcgatccatttcatagcccaatc 414  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  22913 cgcaaaagcttccggagaagaaaattccttctacacaagcaaatgcaacgattctttcagcaaaagaatcgcttgaatcaatccatttcattgcccaatc 22814  T
Q  415 agcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttcagcagaatcgcttatatatgtttcaatgagaagggagtacatc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22813 agcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttcagcagaatcgcttatatatgtttcaatgagaagggagtacatc 22714  T
Q  515 tcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggagatttgaacttctttcatgaaccttcc 597  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  22713 tcagaatggatgttttcaattgcaatttggaaaccatagaaggcacgtgcttcggagatttggacttctttcatgaatcttcc 22631  T

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Target: chr7 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 15 - 597
Target Start/End: Original strand, 10196875 - 10197457
Alignment:
Q  15 tataaaccttttcacagccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaagg 114  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10196875 tataaaccttttcacaaccaagatcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccattcatcccaaccaacgcgcaagg 10196974  T
Q  115 aagcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagtataac 214  Q
    ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10196975 aagagcatagcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttagtagaagtgagtataac 10197074  T
Q  215 aaacaagcaaaatcacagtgtagaccttcatcgtgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttttcaaccagaaaatcg 314  Q
    |||||||||||||||||||| |||||||| ||  |||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||    
T  10197075 aaacaagcaaaatcacagtgcagaccttcgtcacgtgaaataagctcgtttgagaatgttaaccctggcattaaaccgcgctttttcaaccagaaaatcg 10197174  T
Q  315 cgcagaagcttccagagaagaaaattccttctacacaagcaaatgcaacaattctttcagcaaaagaatcgcttgaatcgatccatttcatagcccaatc 414  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  10197175 cgcaaaagcttccggagaagaaaattccttctacacaagcaaatgcaacgattctttcagcaaaagaatcgcttgaatcaatccatttcattgcccaatc 10197274  T
Q  415 agcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttcagcagaatcgcttatatatgtttcaatgagaagggagtacatc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10197275 agcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttcagcagaatcgcttatatatgtttcaatgagaagggagtacatc 10197374  T
Q  515 tcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggagatttgaacttctttcatgaaccttcc 597  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  10197375 tcagaatggatgttttcaattgcaatttggaaaccatagaaggcacgtgcttcggagatttggacttctttcatgaatcttcc 10197457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Complemental strand, 19457722 - 19457151
Alignment:
Q  17 taaaccttttcacagccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaaggaa 116  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||    
T  19457722 taaaccttttcacaaccaagctcacccaataacctatcagcaacaaactcaatatacgtactcatcaaacccccattcatcccaaccaacgcgcaaggaa 19457623  T
Q  117 gcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagtataacaa 216  Q
    |||||| ||| ||||| || | |||||||||||||||||  || |||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  19457622 gcgcgtggcacacaaactccctttcaatttcaacagcatcacaaacaatttctttcacgcgctctgaacttagcttctttcgtagaagtgagtataacaa 19457523  T
Q  217 acaagcaaaatcacagtgtagaccttcatcgtgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttttcaaccagaaaatcgcg 316  Q
    |||||| ||||||||||| |  ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  19457522 acaagcgaaatcacagtgcaatccttcgtcgcgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgctttttcaaccagaaaatcgca 19457423  T
Q  317 cagaagcttccagagaagaaaattccttctacacaagcaaatgcaacaattctttcagcaaaagaatcgcttgaatcgatccatttcatagcccaatcag 416  Q
    ||||||||||| ||||| || |||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  19457422 cagaagcttccggagaaaaagattccttcaacacaagcaaacgcaacgattctttctgcaaaagaatcgcttgaatcgatccatttcatcgcccaatcag 19457323  T
Q  417 cctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttcagcagaatcgcttatatatgtttcaatgagaagggagtacatctc 516  Q
    | || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||| || ||||||||    
T  19457322 ctttcttcgcgatacatggaattgtttcaattgcatgaaataagcgattcttttcagcggaatcgcttatatacgtttcgaggagaagagaatacatctc 19457223  T
Q  517 agaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggagatttgaacttctttcat 588  Q
    ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| | |||||||||    
T  19457222 agagtggatgttttcaattgcaatctggaaaccgtagaaggcacgtgcttcagagacttggatttctttcat 19457151  T

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Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 597
Target Start/End: Original strand, 25025367 - 25025949
Alignment:
Q  15 tataaaccttttcacagccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaagg 114  Q
    ||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  25025367 tataaactttctcacaaccaagctcacccaataacctatcagcaacaaactcaatatactgactcatcaattcaccgttcatcccaaccaacgcgcaagg 25025466  T
Q  115 aagcgcgttgcagacaaattcacgttcaatttcaacagcattgcatacaatttccttcacacgctctgaagttagtttctttcgtagaagtgagtataac 214  Q
    |||||||| ||| ||||| || | |||||| ||||| ||||  |  ||||| | |  ||| ||||||| | | |||||||  || |  || |||||||||    
T  25025467 aagcgcgtcgcatacaaactccctttcaatctcaaccgcatcacgaacaatcttcaccacgcgctctgtactcagtttctgacgcaatagcgagtataac 25025566  T
Q  215 aaacaagcaaaatcacagtgtagaccttcatcgtgtgaaataagctcgtttgagaaggttaatcccggcattaaaccgcgttttttcaaccagaaaatcg 314  Q
    ||||||||||||||||||||||  ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25025567 aaacaagcaaaatcacagtgtaagccttcgtcgcgtgaaataagctcgtttgagaaagttaatcccggcattaaaccgcgttttttcaaccagaaaatcg 25025666  T
Q  315 cgcagaagcttccagagaagaaaattccttctacacaagcaaatgcaacaattctttcagcaaaagaatcgcttgaatcgatccatttcatagcccaatc 414  Q
    | ||||||||||| ||||||||||||||||| |||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  25025667 cacagaagcttccggagaagaaaattccttcaacacaagcgaaagcaacgattctttctgcaaaagaatcgcttgaatcgatccatttcaaagcccaatc 25025766  T
Q  415 agcctttttcgcgatacatggaattgtctcaattgcatgaaataagcgattcttttcagcagaatcgcttatatatgtttcaatgagaagggagtacatc 514  Q
    ||| || || || ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||| | |||||| || ||||||    
T  25025767 agctttcttagcaatacacggaattgtgtcaattgcgtgaaataatcgattcttttcagcagaatcgcttatatacgtttcgaggagaagagaatacatc 25025866  T
Q  515 tcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggagatttgaacttctttcatgaaccttcc 597  Q
    || || |||||||||||||| || || || || || ||||| ||||| ||||| ||||||||||||||||||||||| |||||    
T  25025867 tctgagtggatgttttcaatagcgatttgaaacccgtagaaagcacgcgcttcagagatttgaacttctttcatgaatcttcc 25025949  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 42307895 - 42307838
Alignment:
Q  15 tataaaccttttcacagccaagctcacccaataatctatcagcaacaaactcaatata 72  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  42307895 tataaaccttctcacaaccaagctcacccaataacctatcagcaacaaactcaatata 42307838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 682775 - 682675
Alignment:
Q  15 tataaaccttttcacagccaagctcacccaataatctatcagcaacaaactcaatataagtactcatcaatccaccgttcatcccaaccaacgcgcaagg 114  Q
    |||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  682775 tataaaccttctcacaaccaagctcatccaataacctatcagcaacaaactcaatatactaactcatcaattcaccgttcatcccaaccaacgcgcaagg 682676  T
Q  115 a 115  Q
    |    
T  682675 a 682675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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