View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_6 (Length: 553)
Name: NF21526_low_6
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 17 - 542
Target Start/End: Complemental strand, 56493033 - 56492508
Alignment:
| Q |
17 |
aaaggattctttagttgcaaagagtcaagtatttgggaaaaaggtgagagaagttgtgtggaacgaagagcagcctgaggacccatttggaaaaaggtat |
116 |
Q |
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| T |
56493033 |
aaaggattctttagttgcaaagagtcaagtatttgggaaaaaggtgagagaagttgtgtggaacgaagagcagcctgaggacccatttggaaaaaggtat |
56492934 |
T |
|
| Q |
117 |
tgaaaagagaaggggcatatctagcagcagcggtgtaaagaacaccgaaatctcctctaacagatagagggggaagagccattgcagctgtagacaaggg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492933 |
tgaaaagagaaggggcatatctagcagcagcggtgtaaagaacaccgaaatctcctctaacagatagagggggaagagccattgcagctgtagacaaggg |
56492834 |
T |
|
| Q |
217 |
aagtacagcatccaaaagcttctgccattcttgaacagcttcaggacctgcatagttgtgaaggtcctttaaaaactcagtaggacctatgcgtgacaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492833 |
aagtacagcatccaaaagcttctgccattcttgaacagcttcaggacctgcatagttgtgaaggtcctttaaaaactcagtaggacctatgcgtgacaag |
56492734 |
T |
|
| Q |
317 |
aaatcagcttcaggtacatggaccatccatgaatcataagtagcgcaggggacggactctcccaaagcatcaagaacttgagcaagagggttagcctgtg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492733 |
aaatcagcttcaggtacatggaccatccatgaatcataagtagcgcaggggacggactctcccaaagcatcaagaacttgagcaagagggttagcctgtg |
56492634 |
T |
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| Q |
417 |
gacctcttgactgcaaaccagagaataatgatggaccggaatcaaacttatagcctttgacatcaaaagaatgagcagcacctccagcatggtcgtggct |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56492633 |
gacctcttgactgcaaaccagagaataatgatggaccggaatcaaacttatagcctttgacatcaaaagaatgagcagcacctccagcatggtcgtggct |
56492534 |
T |
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| Q |
517 |
ttcgaaaacgacaacatcttgttcat |
542 |
Q |
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|||||||||||||||||||||||||| |
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| T |
56492533 |
ttcgaaaacgacaacatcttgttcat |
56492508 |
T |
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