View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21526_low_7 (Length: 442)
Name: NF21526_low_7
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 30782281 - 30782718
Alignment:
| Q |
1 |
gcaactgactccgttcaagaaaacaactctgtccattccatatttttaaaagacttttggaagtgtatttcttgaatatatttttgttcgaaatatacat |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30782281 |
gcaaccgactccgttcaagaaaacaactctgtccattccatatttttaaaagatttttggaagtatatttctcgaatatatttttgttcgaaatatacat |
30782380 |
T |
|
| Q |
101 |
taagagacacacaactatgannnnnnnnnccttccaaatttgatcattggaagtgattaagaagtttgtgaagtttcagatcaatttcttgtatttaaga |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30782381 |
taagagacacacaactatgatttttttttccttccaaatttgttcattggaagtgattaagaagtttgtgaagtttcagatcaatttcttgtatttaaga |
30782480 |
T |
|
| Q |
201 |
aacacaaaattacacacattaatgtatctaagtcatccattgagatcgattcatattacac-ttccattaaataatccaaaagtttatgtatctaaatct |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30782481 |
aacacaaaattacacacattaatgtatctaagtcatccattgagatcgattcatattacaccttccattaaataatccaaaagtttatgtatctaaatct |
30782580 |
T |
|
| Q |
300 |
tcctttccaattggcaatatggtttgcaacactttcaatggtgtttacttatatgtcagccgtttacgcgatcactaggaatctggataactgatacaat |
399 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30782581 |
tcctttccaattggcgatatggtttgcaacactttcaatggtgtttacttatatgtcagccgtttacgcgatcactaggaatctgtataactgatacaat |
30782680 |
T |
|
| Q |
400 |
ggatgggtcatgttttctgcgtttgctcctttgcttct |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30782681 |
ggatgggtcatgttttctgcgtttgctcctttgcttct |
30782718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University