View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21526_low_8 (Length: 435)
Name: NF21526_low_8
Description: NF21526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21526_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 275 - 425
Target Start/End: Original strand, 4702400 - 4702550
Alignment:
| Q |
275 |
ttataattgttctattgaaatataatctctacaatttatttctttcccgcagtgactccttatactctcatttgatttgttagagcaaattaatcaaagt |
374 |
Q |
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| T |
4702400 |
ttataattgttctattgaaatataatctctacaatttatttctttcctgcagtgactccttatactctcatttgatttgttagagcaaattaatcaaagt |
4702499 |
T |
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| Q |
375 |
taaattgaatattataatatgtgttacattatataccaccactagtctctg |
425 |
Q |
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| T |
4702500 |
taaattgaatattataatatgtgttacattatataccaccactagtctctg |
4702550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 4702238 - 4702390
Alignment:
| Q |
19 |
acagggcactagactggcaaagagattttgcggcctaatcctgttttgctctctggcctgctgccccacaccaggtaggggttgacggattcttttgaca |
118 |
Q |
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| T |
4702238 |
acagggcactagactagaccagagattttgcggcctaatcctgttttgctctctggcctgctgccccacaccaggtaggggttgacggattcttttgaca |
4702337 |
T |
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| Q |
119 |
gcaatacatactagctgtggctggaacttccgaataaattgaatggttaagaa |
171 |
Q |
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| T |
4702338 |
gcaatacatactagctgtggctggaacttccgaataaattgaatggttaagaa |
4702390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 4705677 - 4705709
Alignment:
| Q |
236 |
aatattggaacttttttcataattattttagtc |
268 |
Q |
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| T |
4705677 |
aatattggaactttttccataattattttagtc |
4705709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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