View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21527_high_11 (Length: 416)

Name: NF21527_high_11
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21527_high_11
NF21527_high_11
[»] chr4 (3 HSPs)
chr4 (118-281)||(1980981-1981144)
chr4 (136-261)||(39634640-39634767)
chr4 (134-200)||(33906245-33906312)
[»] chr7 (2 HSPs)
chr7 (118-261)||(1097929-1098073)
chr7 (157-218)||(38177860-38177921)
[»] chr2 (4 HSPs)
chr2 (134-260)||(32491409-32491537)
chr2 (129-261)||(37098273-37098406)
chr2 (118-251)||(15749444-15749576)
chr2 (159-227)||(37225664-37225732)
[»] chr1 (2 HSPs)
chr1 (118-261)||(4126140-4126285)
chr1 (118-262)||(21907893-21908039)
[»] chr5 (3 HSPs)
chr5 (158-261)||(8874597-8874700)
chr5 (128-261)||(6276611-6276745)
chr5 (118-258)||(29952719-29952863)
[»] chr6 (2 HSPs)
chr6 (118-261)||(6552800-6552945)
chr6 (134-259)||(30767546-30767672)
[»] chr3 (2 HSPs)
chr3 (140-222)||(45012325-45012408)
chr3 (158-222)||(45858175-45858239)
[»] chr8 (3 HSPs)
chr8 (134-200)||(35958146-35958213)
chr8 (157-222)||(29456626-29456692)
chr8 (118-151)||(29456563-29456596)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 118 - 281
Target Start/End: Complemental strand, 1981144 - 1980981
Alignment:
Q  118 taggctatggtcccctaattaatctaattaaaatattcacatgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||    
T  1981144 taggctatggtcccctaattaatctaattaaaatattcacatgttattagatttattaacaacaaatataaatagttttatatgttatattattttaaat 1981045  T
Q  218 tatcttgtatggtcttttccacaacatattttaaacggaatgaactatagtgatatgattttgc 281  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||    
T  1981044 tatcttgtatggtctttttcacaacatattttaaacggaatgaaccatagtgatatggttttgc 1980981  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 136 - 261
Target Start/End: Complemental strand, 39634767 - 39634640
Alignment:
Q  136 ttaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtatggt-ctt 233  Q
    |||||||||||||||| || || || | |||||||| ||||||||| ||||| | || ||||||||||||||| ||||||||| ||||  |||||| |||    
T  39634767 ttaatctaattaaaatgtttaccatatgattagattaattgacaactaatataattagttttatatgttatattattttaaatcatctcatatggtcctt 39634668  T
Q  234 ttccacaacatattttaaacggaatgaa 261  Q
    ||||||||||||||||||| ||||||||    
T  39634667 ttccacaacatattttaaatggaatgaa 39634640  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 33906245 - 33906312
Alignment:
Q  134 aattaatctaattaaaatattca-catgttattagatttattgacaacaaatatcaataattttatat 200  Q
    |||||||||||||||||| |||| ||| |||||||||| ||||||||| ||||||| || ||||||||    
T  33906245 aattaatctaattaaaatgttcatcatattattagattaattgacaactaatatcattagttttatat 33906312  T

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Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 1097929 - 1098073
Alignment:
Q  118 taggctatggtcccctaattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaa 216  Q
    ||||||||||||| | |||||||||||||||||| ||||| |||| |||||||| | ||||||| ||||||| || ||||||||||||||| ||||||||    
T  1097929 taggctatggtcctccaattaatctaattaaaatgttcactatgtcattagattaactgacaactaatatcattagttttatatgttatattattttaaa 1098028  T
Q  217 ttatcttgtatggtcttttccacaacatattttaaacggaatgaa 261  Q
    ||||||  ||||||| ||||||| |||||||||||| ||||||||    
T  1098029 ttatctcatatggtcctttccacgacatattttaaatggaatgaa 1098073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 38177921 - 38177860
Alignment:
Q  157 catgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaatt 218  Q
    ||||||| ||||||||||| ||| |||||||| ||||||||||  |||||| ||||||||||    
T  38177921 catgttactagatttattgtcaataaatatcattaattttatactttatattattttaaatt 38177860  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 260
Target Start/End: Original strand, 32491409 - 32491537
Alignment:
Q  134 aattaatctaattaaaatatt-cac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtatggtc 231  Q
    |||||||||||||||||| || ||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||||||||  |||||||    
T  32491409 aattaatctaattaaaatgtttcaccatgttattagattaattgacaactaatatcattaattttatatgttatattattttaaattatctcatatggtc 32491508  T
Q  232 ttttccacaacatattttaaacggaatga 260  Q
     ||| || |||||||||||||||||||||    
T  32491509 ctttacataacatattttaaacggaatga 32491537  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 261
Target Start/End: Complemental strand, 37098406 - 37098273
Alignment:
Q  129 cccctaattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtat 227  Q
    ||||||||||||||||||||||| ||||| || |||||||||| || |||||| ||||||| || ||||||||||||||| |||||||||| ||   |||    
T  37098406 cccctaattaatctaattaaaatgttcaccatattattagattaatagacaactaatatcattagttttatatgttatattattttaaattgtcgcatat 37098307  T
Q  228 ggtcttttccacaacatattttaaacggaatgaa 261  Q
    | || ||||||||| |||||||||| ||||||||    
T  37098306 gctcctttccacaatatattttaaatggaatgaa 37098273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 15749444 - 15749576
Alignment:
Q  118 taggctatggtcccctaattaatctaattaaaatattca-catgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaa 216  Q
    |||| |||||||||| ||||||||||||||||||  ||| |||||||||||||| ||||||||| ||||||| ||||||| || ||||||| ||||| ||    
T  15749444 taggttatggtcccccaattaatctaattaaaatgatcagcatgttattagattaattgacaactaatatcattaattttttacgttatattatttttaa 15749543  T
Q  217 ttatcttgtatggtcttttccacaacatattttaa 251  Q
    ||| ||   |||||| ||||| |||||||| ||||    
T  15749544 ttaact--catggtcctttccgcaacatatgttaa 15749576  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 37225664 - 37225732
Alignment:
Q  159 tgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtat 227  Q
    |||||||||||  ||||||||| ||||||| || |||||||  | |||  |||||||||||||||||||    
T  37225664 tgttattagatcaattgacaactaatatcattagttttatacttaatacaattttaaattatcttgtat 37225732  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 4126285 - 4126140
Alignment:
Q  118 taggctatggtccc-ctaattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaa 215  Q
    |||||||||||||| | |||||||||||| ||||| ||||| || |||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||    
T  4126285 taggctatggtccctccaattaatctaatcaaaatgttcaccatattattagattaattgacaactaatatcattaattttatatgttatattattttaa 4126186  T
Q  216 attatcttgtatggtcttttccacaacatattttaaacggaatgaa 261  Q
    |||||||  |||| || |||||| |||||||||||||  |||||||    
T  4126185 attatctcatatgatcctttccataacatattttaaattgaatgaa 4126140  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 262
Target Start/End: Original strand, 21907893 - 21908039
Alignment:
Q  118 taggctatggtcccct-aattaatctaattaaaatattcaca-tgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaa 215  Q
    |||| ||||||||||| |||||||||||||||||| || ||| |||||||||||| ||||||||| ||||||| |  ||||||||||||||  |||||||    
T  21907893 taggttatggtcccctcaattaatctaattaaaatgtttacaatgttattagattaattgacaactaatatcatttgttttatatgttatagtattttaa 21907992  T
Q  216 attatcttgtatggtcttttccacaacatattttaaacggaatgaac 262  Q
    |||||||   |||||  ||| | || ||||||||||| |||||||||    
T  21907993 attatctcacatggttcttttcgcatcatattttaaatggaatgaac 21908039  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 8874700 - 8874597
Alignment:
Q  158 atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtatggtcttttccacaacatattttaaacggaa 257  Q
    ||||||||||||| ||||||||| ||||||| || | ||||||||||||| ||||||| ||||||  ||||||| |||||||||||||||||||| ||||    
T  8874700 atgttattagattaattgacaactaatatcattagtcttatatgttatattattttaatttatctcatatggtcatttccacaacatattttaaatggaa 8874601  T
Q  258 tgaa 261  Q
    ||||    
T  8874600 tgaa 8874597  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 128 - 261
Target Start/End: Original strand, 6276611 - 6276745
Alignment:
Q  128 tcccctaattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgta 226  Q
    ||||| |||||||||||||||||| ||||| |||| |||||||| ||||||||| ||||||| || || | ||||||||||| ||||||||||| |  ||    
T  6276611 tcccccaattaatctaattaaaatgttcaccatgtcattagattaattgacaactaatatcattagttatgtatgttatatccttttaaattatttcata 6276710  T
Q  227 tggtcttttccacaacatattttaaacggaatgaa 261  Q
    ||| | ||| ||||| |||||||||| ||||||||    
T  6276711 tggccattttcacaaaatattttaaatggaatgaa 6276745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 258
Target Start/End: Original strand, 29952719 - 29952863
Alignment:
Q  118 taggctatggtcccct-aattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttata--tcatttt 213  Q
    |||||||| ||||||| |||| || |||||||||  ||||| || |||||||||||||||||||| | ||| | || ||| ||||||||||  | |||||    
T  29952719 taggctatagtcccctcaattgatttaattaaaacgttcaccatattattagatttattgacaactagtattattagtttgatatgttatattttatttt 29952818  T
Q  214 aaattatcttgtatggtcttttccacaacatattttaaacggaat 258  Q
    |||||||||   || ||| ||||| |||||||||||||| |||||    
T  29952819 aaattatctcacattgtcctttcctcaacatattttaaatggaat 29952863  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 6552800 - 6552945
Alignment:
Q  118 taggctatggtcccct-aattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaa 215  Q
    |||| ||||| ||||| ||||||| ||||| |||| ||||| ||  |||||||||  |||||||| ||||||| || |||||||| |||||| |||||||    
T  6552800 taggttatggccccctcaattaatttaattcaaatgttcaccataatattagattatttgacaactaatatcattagttttatatattatattattttaa 6552899  T
Q  216 attatcttgtatggtcttttccacaacatattttaaacggaatgaa 261  Q
    |||||||  ||||||| |||||||||||||||||||| ||||||||    
T  6552900 attatctcatatggtcctttccacaacatattttaaatggaatgaa 6552945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 30767546 - 30767672
Alignment:
Q  134 aattaatctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatcttgtatggtct 232  Q
    ||||||||||||||||||||| || ||||||||||||| ||||||||| |||| || || |||||||||||||   ||||||| |||| |  ||| ||      
T  30767546 aattaatctaattaaaatatttactatgttattagattaattgacaactaatagcattagttttatatgttatgatattttaagttatttcatatagttc 30767645  T
Q  233 tttccacaacatattttaaacggaatg 259  Q
    |||||||||||||||||||| ||||||    
T  30767646 tttccacaacatattttaaatggaatg 30767672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 45012325 - 45012408
Alignment:
Q  140 tctaattaaaatattcac-atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatct 222  Q
    ||||||||||||||| || ||||||||||||| ||||||||| ||||| | || ||||||||||||||| ||||||||||||||    
T  45012325 tctaattaaaatatttaccatgttattagattaattgacaactaatattattagttttatatgttatattattttaaattatct 45012408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 45858239 - 45858175
Alignment:
Q  158 atgttattagatttattgacaacaaatatcaataattttatatgttatatcattttaaattatct 222  Q
    |||||| |||||| |||| || | ||||||| ||||||||||  |||||| ||||||||||||||    
T  45858239 atgttactagattaattggcagctaatatcattaattttatactttatattattttaaattatct 45858175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 35958146 - 35958213
Alignment:
Q  134 aattaatctaattaaaatattca-catgttattagatttattgacaacaaatatcaataattttatat 200  Q
    |||||||||||||||||| |||| ||| ||||||| || ||||||||| ||||||| || ||||||||    
T  35958146 aattaatctaattaaaatgttcatcatattattaggttaattgacaactaatatcattagttttatat 35958213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 29456626 - 29456692
Alignment:
Q  157 catgttattagatttattga-caacaaatatcaataattttatatgttatatcattttaaattatct 222  Q
    ||||||| |||||| ||||  |||| ||||||||||||||||||  |||||| ||||||||||||||    
T  29456626 catgttactagattaattgggcaactaatatcaataattttatactttatattattttaaattatct 29456692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 29456563 - 29456596
Alignment:
Q  118 taggctatggtcccctaattaatctaattaaaat 151  Q
    ||||||||||||||| ||||||||||||||||||    
T  29456563 taggctatggtcccccaattaatctaattaaaat 29456596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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