View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21527_high_21 (Length: 344)
Name: NF21527_high_21
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 31793241 - 31793542
Alignment:
| Q |
7 |
tcgaagaatatgaaggcataattgtgattggtgctactaactctcacgagtcaatagatgaggctttgttgagacatgggcgatttgatcgccttgttga |
106 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
31793241 |
tcgaacaaaatgaaggcataattgtgattggtgctactaactctcacgagtcaatagatgaggctttgttgagacacgggcgatttgatcgccgtgttga |
31793340 |
T |
|
| Q |
107 |
tgttcccataccagatagaaaaggacggcgagagattttggaatatcacatgtcaaaggtatgcttttactcgtgaaaaatatttatcttgggttggatg |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
31793341 |
tgttcccataccagatagaaaaggatggctggagatttttgaatatcacatgtcaaaggtatgcttttactcttgaaaaatatttatcttgggt--gatg |
31793438 |
T |
|
| Q |
207 |
gcttaataa-nnnnnnnaggcacgtgtgcagtgcatgtagtatattggtgcaaagcattgtgtagtatgatttccttaagctttgttcaggtgtctgctg |
305 |
Q |
| |
|
|||||| || | |||| |||||| ||| |||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31793439 |
gcttaagaatttttttgaagcacttgtgcactgcttgtactatattggtgcaaagaattgtgtagtatgatttccttaagctatgttcaggtgtctgctg |
31793538 |
T |
|
| Q |
306 |
gata |
309 |
Q |
| |
|
|||| |
|
|
| T |
31793539 |
gata |
31793542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 32013372 - 32013670
Alignment:
| Q |
16 |
atgaaggcataattgtgattggtgctactaactctcacgagtcaatagatgaggctttgttgagacatgggcgatttgatcgccttgttgatgttcccat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||||||| |
|
|
| T |
32013372 |
atgaaggcataattgtgattggtgctactaactctcccgagtcaatagataaggctttgttgagacatgggagatttgatcgccatgttgttgttcccaa |
32013471 |
T |
|
| Q |
116 |
accagatagaaaaggacggcgagagattttggaatatcacatgtcaaaggtatgcttttactcgtgaaaaatatt--------tatcttgggttggatgg |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
32013472 |
tccagatgtaaaaggacggcgagagattttggaatctcacatgtcaaaggtatgcttttactcttgaaaaatattttattttgtatcttgggttggatgg |
32013571 |
T |
|
| Q |
208 |
cttaataannnnnnnaggcacgtgtgcagtgcatgtagtatattggtgcaaagcattgtgtagtatgatttccttaagctttgttcaggtgtctgctgga |
307 |
Q |
| |
|
||||| || |||||||||| |||||| || | |||||||||| |||||||||||| ||||||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
32013572 |
cttaagaa--ttttgaggcacgtgtccagtgcttgcactatattggtg-aaagcattgtgttgtatgatttccttcagctatgttcaggtgtgtgctgga |
32013668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 32024781 - 32024976
Alignment:
| Q |
16 |
atgaaggcataattgtgattggtgctactaactctcacgagtcaatagatgaggctttgttgagacatgggcgatttgatcgccttgttgatgttcccat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
32024781 |
atgaaggcataattgtgattggtgctactaagtctcacaagttaatagatgaggctttgttgagacatgggcgatttgatcgccttgttgttgttcgcaa |
32024880 |
T |
|
| Q |
116 |
accagatagaaaaggacggcgagagattttggaatatcacatgtcaaaggtatgcttttactcgtgaaaaatatttatcttgggttggatggcttaa |
212 |
Q |
| |
|
||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
32024881 |
acctgatgaagaaggacggcgagagattttggaatatcacatgtcaaaggtatgcttttactcttgaaaaata-ttatcttgggttggatggcttaa |
32024976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 32034854 - 32034937
Alignment:
| Q |
226 |
cacgtgtgcagtgcatgtagtatattggtgcaaagcattgtgtagtatgatttccttaagctttgttcaggtgtctgctggata |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32034854 |
cacgtgtgcagtgcatgtactatattggtgcaaagcattgtgtagtatgatttccttaagctttgttcaggtgtctgctggata |
32034937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 287
Target Start/End: Complemental strand, 48113165 - 48112889
Alignment:
| Q |
21 |
ggcataattgtgattggtgctactaactctcacgagtcaatagatgaggctttgttgagacatgggcgatttgatcgccttgttgatgttcccataccag |
120 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||||| ||||| |||||||| | |||| ||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
48113165 |
ggcataattgtgattggtgctactaattttcctgagtcactagataaggctttggttagacctgggcgatttgatcgccatgttgttgttcccaatccag |
48113066 |
T |
|
| Q |
121 |
atagaaaaggacggcgagagattttggaatatcacatgtcaaaggtatgcttttactcgt---gaaaaa--tatt-------tatcttgggttggatggc |
208 |
Q |
| |
|
|| | ||||||| ||| |||||||||||| ||||||||||||||| || |||||||| | ||| || |||| ||| |||| ||||||||| |
|
|
| T |
48113065 |
atgtagaaggacgccgacagattttggaatctcacatgtcaaaggtgtg-ttttactcttctggaataatgtatttgtcttgtatgttggtttggatggc |
48112967 |
T |
|
| Q |
209 |
ttaataannnnnnnaggcacgtgtgcagtgcatgtagtatattggtgcaaagcattgtgtagtatgatttccttaagct |
287 |
Q |
| |
|
|||| || |||||||||||||| || || | |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48112966 |
ttaagaatgttttgaggcacgtgtgcag-gcttgcactatattggtgcaaagcattgtgtagtatgatttcctcaagct |
48112889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 48132074 - 48131912
Alignment:
| Q |
16 |
atgaaggcataattgtgattggtgctactaactctcacgagtcaatagatgaggctttgttgagacatgggcgatttgatcgccttgttgatgttcccat |
115 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| | | ||| ||||| |||||||| |||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
48132074 |
atgaaggcataattgtgcttgctgctactaacttacctcaatcactagataaggctttggtgagacctgggcgatttgatcgccatgttgttgttcccaa |
48131975 |
T |
|
| Q |
116 |
accagatagaaaaggacggcgagagattttggaatatcacatgtcaaaggtatgcttttactc |
178 |
Q |
| |
|
|||||| | ||||||||||| | |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
48131974 |
tccagatgtagaaggacggcgacaaattttggaatctcacatgtccaaggtatgcttttactc |
48131912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 48141793 - 48141949
Alignment:
| Q |
21 |
ggcataattgtgattggtgctactaactctcacgagtcaatagatgaggctttgttgagacatgggcgatttgatcgccttgttgatgttcccataccag |
120 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| ||||| | |||||| | |||| || |||||||||||| ||||| |||||||| |||| |
|
|
| T |
48141793 |
ggcataattgtgattggtgctactaatcatcccgagtcactagataatgctttggtaagaccatggtgatttgatcgccatgttgttgttcccaatccag |
48141892 |
T |
|
| Q |
121 |
atagaaaaggacggcgagagattttggaatatcacatgtcaaaggtatgcttttact |
177 |
Q |
| |
|
|| | ||||||||||| |||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
48141893 |
atgtagaaggacggcgacagatattggaatctcacatgtcaaaggtattcttttact |
48141949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 48124051 - 48123961
Alignment:
| Q |
223 |
aggcacgtgtgcagtgcatgtagtatattggtg----caaagcattgtgtagtatgatttccttaagctttgttcaggtgtctgctggata |
309 |
Q |
| |
|
||||||||||||||||| || | |||||||||| ||||||||| |||||||||||||||||||||| || | || |||||||||||| |
|
|
| T |
48124051 |
aggcacgtgtgcagtgcttgcactatattggtgtaagcaaagcattctgtagtatgatttccttaagctatgatagggagtctgctggata |
48123961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 25254365 - 25254521
Alignment:
| Q |
21 |
ggcataattgtgattggtgctactaactctcacgagtcaatagatgaggctttgttgagacatgggcgatttgatcgccttgttgatgttcccataccag |
120 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| ||||| | |||||| | |||| || |||||||||| | ||||| |||||||| |||| |
|
|
| T |
25254365 |
ggcataattgtgattggtgctactaatcatcccgagtcactagataatgctttggtaagaccatggtgatttgatcgtcatgttgttgttcccaatccag |
25254464 |
T |
|
| Q |
121 |
atagaaaaggacggcgagagattttggaatatcacatgtcaaaggtatgcttttact |
177 |
Q |
| |
|
|| | ||||||||||| |||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
25254465 |
atgtagaaggacggcgacagatattggaatctcacatgtcaaaggtattcttttact |
25254521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University