View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_high_24 (Length: 325)
Name: NF21527_high_24
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 11027245 - 11027535
Alignment:
| Q |
19 |
atactgttccaacaattcattaaaattatatcacatttcaaaacacttaaattatactatagcttctctccatgtgnnnnnnntcaccctgcttcctctc |
118 |
Q |
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| T |
11027245 |
atactgttccaacaattcattataattatatcacatatcaaaacacttaaattatactatagcttctctccatgtgaaaaaa-tcaccctgcttcctctc |
11027343 |
T |
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| Q |
119 |
atgcacacatatataaaaactggaaccaaaccttatatataaaaaattaaccctagtaaaatatcagttgagatcattttgctgttctagacattcatgg |
218 |
Q |
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| T |
11027344 |
atgcacacatatataaaaactggaaccaaaccttatatataaaaaattaaccctagtaaaatatcagttgagatcattttgttgttctagacattcttgg |
11027443 |
T |
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| Q |
219 |
taaagtaattacattcactggtatcatcactaaaacaatagagtaccaatgtaaaagaataacaaatgtgagagaatcctgcaattacacag |
310 |
Q |
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| T |
11027444 |
taaagtaattacattcactggtatcatcaataaaacaatagagtaccaatgtaaaagaataacaaatgtgagagaatcctgcaattacacag |
11027535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 11042060 - 11042126
Alignment:
| Q |
221 |
aagtaattacattcactggtatcatcactaaaacaatagagtaccaatgtaaaagaataacaaatgt |
287 |
Q |
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| T |
11042060 |
aagtaattacattcactggtatcctcattaaaacaatggagtaccaacgtaaaagaataacaaatgt |
11042126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 10993668 - 10993713
Alignment:
| Q |
242 |
tcatcactaaaacaatagagtaccaatgtaaaagaataacaaatgt |
287 |
Q |
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| T |
10993668 |
tcatcactaaaacagttgagtaccaatgcaaatgaataacaaatgt |
10993713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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