View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_high_25 (Length: 318)
Name: NF21527_high_25
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 55622685 - 55622374
Alignment:
| Q |
1 |
agaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccattacatttgaagcaaggccct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55622685 |
agaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccattacatttgaagcaagaccct |
55622586 |
T |
|
| Q |
101 |
tgaaagcatacaattgcagggatg---attttgagggtaaaattgctgttagagttggccatttggctgctaaatttaatgttgaataaccatatgcaca |
197 |
Q |
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|||||||||||||||||| ||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55622585 |
tgaaagcatacaattgcaaggatgtttattatgggagtaaaattgctgttagagttggccatttggctgctaaatttaatgttgaataaccatatgcaca |
55622486 |
T |
|
| Q |
198 |
tacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgctttagcacagttttcctagagctgtgttaaggggtaat |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55622485 |
tacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgctttagcacagttttcctagagctgtgttaaggggtaat |
55622386 |
T |
|
| Q |
298 |
ttttgccctttg |
309 |
Q |
| |
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||||||| |||| |
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| T |
55622385 |
ttttgccttttg |
55622374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 55629989 - 55629678
Alignment:
| Q |
1 |
agaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccattacatttgaagcaaggccct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55629989 |
agaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccattacatttgaagcaagaccct |
55629890 |
T |
|
| Q |
101 |
tgaaagcatacaattgcagggatg---attttgagggtaaaattgctgttagagttggccatttggctgctaaatttaatgttgaataaccatatgcaca |
197 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55629889 |
tgaaagcatacaattgcaaggatgtttattatgggagtaaaattgctgttagagttggccatttggctgctaaatttaatgttgaataaccatatgcaca |
55629790 |
T |
|
| Q |
198 |
tacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgctttagcacagttttcctagagctgtgttaaggggtaat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55629789 |
tacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgctttagcacagttttcctagagctgtgttaaggggtaat |
55629690 |
T |
|
| Q |
298 |
ttttgccctttg |
309 |
Q |
| |
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||||||| |||| |
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|
| T |
55629689 |
ttttgccttttg |
55629678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 55615381 - 55615086
Alignment:
| Q |
1 |
agaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccattacatttgaagcaaggccct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
55615381 |
agaagaaatagctacatgcaagctaagtggttcaatacttacaagagaacaactaatgaggttgcaactaacaagtccattacatttgaagcaagaccct |
55615282 |
T |
|
| Q |
101 |
tgaaagcatacaattgcagggatg---attttgagggtaaaattgctgttagagttggccatttggctgctaaatttaatgttgaataaccatatgcaca |
197 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55615281 |
tgaaagcatacaattgcaaggatgtttattatgggagtaaaattgctgttagagttggccatttggctgctaaatttaatgttgaataaccatatgcaca |
55615182 |
T |
|
| Q |
198 |
tacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgctttagcacagttttcctagagctgtgttaagggg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||||| |||| |
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| T |
55615181 |
tacacagtttttccttctttaggtgactgtgtaaaaccccttagcacagggcacagaggtgtttctgcacagttttcctagtgatgtgttatgggg |
55615086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 134 - 293
Target Start/End: Original strand, 16480128 - 16480287
Alignment:
| Q |
134 |
gtaaaattgctgttagagttggccatttggctgctaaatttaatgttgaataaccatatgcacatacacagtttttccttctttaggtgactgtgtaaaa |
233 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16480128 |
gtaaaattgctgttagagttggccatttggctgctaaatttaatgttgaataaccatatgcacatacacagtttttccttctttaggtgactgtgtaaaa |
16480227 |
T |
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| Q |
234 |
ccccttagcacagggcacagaggtgctttagcacagttttcctagagctgtgttaagggg |
293 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||||| | ||||||| |||| |
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|
| T |
16480228 |
ccccttagcacagggcacagaggtgtttctgcacagttttcctagtgatgtgttatgggg |
16480287 |
T |
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