View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_high_3 (Length: 535)
Name: NF21527_high_3
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Original strand, 30516673 - 30517182
Alignment:
| Q |
19 |
actattattattactgcatttcaaacctaaacttccaaggaatgatgtatcagttgaagttgatccaatttgagcagctttttgtaacaaagctgtagct |
118 |
Q |
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| T |
30516673 |
actattattattactgcatttcaaacctaaacttccaaggaatgatgtatcagttgaagttgatccaatttgagcagctttttgtaacaaagctgtagct |
30516772 |
T |
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| Q |
119 |
gacatgtttgctgaagatgtttgatgtgatatttggtgttgtgagctgtacaaggaagaaatttgttgacttgtagcatcatgagaaacatccttaacat |
218 |
Q |
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| T |
30516773 |
gacatgtttgctgaagatgtttgatgtgatatttggtgttgtgagctgtacaaggaagaaatttgttgacttgtagcatcatgagaaacatccttaacat |
30516872 |
T |
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| Q |
219 |
taacattaatgtttcctagtggaagtgaagttgtagtactagtaattaattcttggctgcaattgtttgaaagtttagttccaaaaacccaatttagctg |
318 |
Q |
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| T |
30516873 |
taacattaatgtttcctagtggaagtgaagttgtagtactagtaattaattcttggctgcaattgtttgaaagtttagttccaaaaacccaatttagctg |
30516972 |
T |
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| Q |
319 |
ataattattagaatatggtggagggttctcatttccaccatacataatttctcttgaagatgagtcaatttgttgatgaatctcatgcaaactagaattt |
418 |
Q |
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| T |
30516973 |
ataattattagaatatggtggagggttctcatttccaccatacataatttctcttgatgatgagtcaagttgttgttgaatctcatgcaaactagaattt |
30517072 |
T |
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| Q |
419 |
ccattggtggtggttatcattgtttcatgaggttgagaatgagaagtttgattcatccaaagggatagtcctctagtttgattggttgattcaagatgat |
518 |
Q |
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| T |
30517073 |
ccattggtggtggttatcattgtttcatgaggttgagaatgagaagtttgattcatccaaagggatagtcctctagtttgattggttgattcatgatgat |
30517172 |
T |
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| Q |
519 |
gatgatgatg |
528 |
Q |
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| T |
30517173 |
gatgatgatg |
30517182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 38894480 - 38894629
Alignment:
| Q |
33 |
tgcatttcaaacctaaacttccaaggaatgatgtatcagttgaagttgatccaatttgagcagctttttgtaacaaagctgtagctgacatgtttgctga |
132 |
Q |
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||||| |||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
38894480 |
tgcatctcaaacctaagcttccaaggaataatgattcagttgaagttgtcccaatttgagcagctttttgcaacaaagctgttgctgacatgtttgctga |
38894579 |
T |
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| Q |
133 |
agatgtttgatg-tgatat-----ttggtgttgtgagctgtacaaggaag |
176 |
Q |
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| T |
38894580 |
ggttgtttgatgatgagattgtgattggtgttgtgagctatacaaggaag |
38894629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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