View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_high_36 (Length: 268)
Name: NF21527_high_36
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 237
Target Start/End: Complemental strand, 37501684 - 37501445
Alignment:
| Q |
4 |
atcttcctcgttacaacatggacatgtagcag------aaacattcacccctcgatggtgtaagacttatttagttggaatagagttacgacaaaccagc |
97 |
Q |
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| T |
37501684 |
atcttcctcgttacaacatggacatgtagcagccagataaacattcacccctcgatggtgtaagacttatttagttggaatagagttacgacaaaccagc |
37501585 |
T |
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| Q |
98 |
cagataaaagactacacaccggctgaaagtggtaatttccaaatccaatttcatttctccaatgagacaatatcatccctcaaagataagagccaatgat |
197 |
Q |
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| T |
37501584 |
cagataaaagactgcacactagctgaaagtgataatttccaaatccaatttcatttcttcaatgagacaatatcatccctccaagataagagccaatgat |
37501485 |
T |
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| Q |
198 |
aaacactttttgttgtgtattttccatttaaattatcgtt |
237 |
Q |
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| T |
37501484 |
acacactttttgttgtgtattttccatttaaattatcgtt |
37501445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 214
Target Start/End: Complemental strand, 33928545 - 33928336
Alignment:
| Q |
4 |
atcttcctcgttacaacatggacatgtagcagaaacattcacccctcgatggtgtaagacttatttagttggaatagagttacgacaaaccagccagata |
103 |
Q |
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| T |
33928545 |
atcttcctcgt-acaacatggatatgtagcagaaactttcacccctcgatggtgcaggatatgtttagacggaatagaattgtgacaaatctgccaaata |
33928447 |
T |
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| Q |
104 |
aaagactacacaccggctgaaagtggtaatttccaaatccaatttcatttctccaatgagacaatatcatccctcaaagataagagccaatgataaacac |
203 |
Q |
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| T |
33928446 |
aaaaattgcacactagctgaaagtggtaacttcaaaatccaattccatttctctaatgagacaatatcatccctccaagataagagccagtgatacacac |
33928347 |
T |
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| Q |
204 |
tttttgttgtg |
214 |
Q |
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|||||| |||| |
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| T |
33928346 |
tttttgctgtg |
33928336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 9194016 - 9194089
Alignment:
| Q |
158 |
aatgagacaatatcatccctcaaagataagagccaatgataaacactttttgttgtgtattttccatttaaatt |
231 |
Q |
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|||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| | | |||||||| |
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| T |
9194016 |
aatgagacaataccatccctccgagataagagccggtgatatgcactttttgttgtgtattcttcgtttaaatt |
9194089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 4 - 231
Target Start/End: Original strand, 32925939 - 32926166
Alignment:
| Q |
4 |
atcttcctcgttacaacatggacatgtagcagaaacattcacccctcgatggtgtaagacttatttagttggaatagagttacgacaaaccagccagata |
103 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||| | ||||||| |||| ||||||||||||||||| ||| || | ||| |||| ||| |
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| T |
32925939 |
atcttcctcgttacatcatggacatgtagtagaaacattcaccctttgatggtgcgagacatatttagttggaatagaattatgaaacacctgccatata |
32926038 |
T |
|
| Q |
104 |
aaagacta-cacaccggctgaaagtggtaatttccaaatccaatttcatttctccaatgagacaatatcatccctcaaagataagagccaatgataaaca |
202 |
Q |
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||| | | ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| || |
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| T |
32926039 |
aaaaaattgcacactagccgaaagtggtaatttccaaatccaattccatttctccaatgagacaatatcatccctccgagataagagccagtgat-cgca |
32926137 |
T |
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| Q |
203 |
ctttttgttgtgtattttccatttaaatt |
231 |
Q |
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||||||| |||||||| ||| |||||||| |
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| T |
32926138 |
ctttttgctgtgtattctccgtttaaatt |
32926166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 10406056 - 10405828
Alignment:
| Q |
4 |
atcttcctcgttacaacatggacatgtagcagaaacattcacccctcgatggtgtaagacttatttagttggaatagagttacgacaaaccagccagata |
103 |
Q |
| |
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||||||| ||||||||||||||| |||| |||||||||||| | |||||||||||| ||| |||||||||| ||||| ||| |||||| | ||| || |
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| T |
10406056 |
atcttccccgttacaacatggacgtgtaccagaaacattcatctctcgatggtgtaggacatatttagttgaaatag--ttattacaaacatgtcaggta |
10405959 |
T |
|
| Q |
104 |
aaagactacacaccggctgaaagtggtaatttccaaatccaatttcatttctccaatgagacaatatcatccctcaaagataagagccaatgataaacac |
203 |
Q |
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||| | | || || |||||||||||||| |||||||||||||| ||||||| || |||||||||| ||| |||| |||||||||||| |||| |||| |
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| T |
10405958 |
aaaaattccatactagctgaaagtggtaacttccaaatccaattccatttcttcagtgagacaataacatgcctccgagataagagccagcgatacacac |
10405859 |
T |
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| Q |
204 |
tttttgttgtgtattttccatttaaattatc |
234 |
Q |
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||||||| ||||||| ||||||||||||||| |
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| T |
10405858 |
tttttgtcgtgtattctccatttaaattatc |
10405828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 32331383 - 32331325
Alignment:
| Q |
14 |
ttacaacatggacatgtagcagaaacattcacccctcgatggtgtaagacttatttagt |
72 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| | ||| |||||||| |
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| T |
32331383 |
ttacaacatggacatatagcagaaacattcacccctcgatggtgcaggacgtatttagt |
32331325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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