View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21527_high_42 (Length: 245)

Name: NF21527_high_42
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21527_high_42
NF21527_high_42
[»] chr4 (3 HSPs)
chr4 (1-229)||(55615380-55615608)
chr4 (1-229)||(55622684-55622912)
chr4 (1-229)||(55629988-55630216)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 55615380 - 55615608
Alignment:
Q  1 ctccatggaggtacatgcatattcattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccactttaccaacaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55615380 ctccatggaggtacatgcatatccattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccactttaccaacaa 55615479  T
Q  101 atactaaagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgtaacgatttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55615480 atactaaagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgtaacgatttcc 55615579  T
Q  201 accataattcacatcaatgtactcatagt 229  Q
    |||||||||||||||||||||||||||||    
T  55615580 accataattcacatcaatgtactcatagt 55615608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 55622684 - 55622912
Alignment:
Q  1 ctccatggaggtacatgcatattcattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccactttaccaacaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55622684 ctccatggaggtacatgcatatccattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccactttaccaacaa 55622783  T
Q  101 atactaaagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgtaacgatttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55622784 atactaaagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgtaacgatttcc 55622883  T
Q  201 accataattcacatcaatgtactcatagt 229  Q
    |||||||||||||||||||||||||||||    
T  55622884 accataattcacatcaatgtactcatagt 55622912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 55629988 - 55630216
Alignment:
Q  1 ctccatggaggtacatgcatattcattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccactttaccaacaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55629988 ctccatggaggtacatgcatatccattgttttcatagaatccttaatagcactgcacattatcctcacaacccttttcagctcttccactttaccaacaa 55630087  T
Q  101 atactaaagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgtaacgatttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55630088 atactaaagggaaaacatcaagtaatgaagtatattgatttgtgggtcgagctatttcaaattcagccataagggatgtttcaacaatgtaacgatttcc 55630187  T
Q  201 accataattcacatcaatgtactcatagt 229  Q
    |||||||||||||||||||||||||||||    
T  55630188 accataattcacatcaatgtactcatagt 55630216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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