View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_high_5 (Length: 503)
Name: NF21527_high_5
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_high_5 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Complemental strand, 34788306 - 34787829
Alignment:
| Q |
19 |
cttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaactccgcaaacgccacaaaaagcagctct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788306 |
cttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctacctccttacacctttcctcaaactccgcaaacgccacaaaaagcagctct |
34788207 |
T |
|
| Q |
119 |
gcttcctcatcatccgctagctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788206 |
gcttcctcatcatccgctagctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaag |
34788107 |
T |
|
| Q |
219 |
caccaaccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788106 |
caccaaccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatcc |
34788007 |
T |
|
| Q |
319 |
ttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788006 |
ttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaac |
34787907 |
T |
|
| Q |
419 |
tgatcaacccgcggcaaaagagtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctca |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34787906 |
tgatcaacccgcggcaaaagagtaaccgcgcgatcccaaacattccgagcatgattaataaacttattcttcatctca |
34787829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Original strand, 2292888 - 2293368
Alignment:
| Q |
19 |
cttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaactccgcaaacgccacaaaaagcagctct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
2292888 |
cttcggaatatgatcaagtgcaaatttataaatacacctcgcccgctcagcctccttacacctttcctcaaactccgcaaaagccacaaaaagcagctca |
2292987 |
T |
|
| Q |
119 |
gcttcctcatcatccgctagct---ccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatcc |
215 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
2292988 |
gcttcctcatcatccgcaagcttctccaccgctctttcataaacattcctcgccttaggaacctcgccattcttcatctcaaacttcgcataacgtatcc |
2293087 |
T |
|
| Q |
216 |
aagcaccaaccctaggatgacacaaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataacca |
315 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
2293088 |
aagcaccaaccctaggatgacacaatacaaatctctcgaaaatccctctagctcgttcaatctcattatatctcagctcaaattttatataagatagcca |
2293187 |
T |
|
| Q |
316 |
tccttgctgatccggcatccacttcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccac |
415 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2293188 |
tccttgctgatccggcatccatttcatccatctctcaaaaacctgtctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccac |
2293287 |
T |
|
| Q |
416 |
aactgatcaacccgcggcaaaagagtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctca |
496 |
Q |
| |
|
|||||||| || || |||||||||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
2293288 |
aactgatccactcgtggcaaaagagtaacagcgcgatcccaaacattcctcgcatggttaataaacttattcttcatctca |
2293368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 139 - 496
Target Start/End: Original strand, 33635664 - 33636021
Alignment:
| Q |
139 |
ctccaccgctctttcataaacaatcctcgccttaggaacctcgccattcttcatctcaaactttgcataacgaatccaagcaccaaccctaggatgacac |
238 |
Q |
| |
|
|||||| ||||||||||||||| | || ||| ||||||| || ||||||||||||||||| || |||||||| | |||||||||||| ||||||||||| |
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|
| T |
33635664 |
ctccacagctctttcataaacacttcttgccctaggaacttcaccattcttcatctcaaatttcgcataacgtaaccaagcaccaacactaggatgacat |
33635763 |
T |
|
| Q |
239 |
aaaacaaatctctcgaaaatccctctcgcacgttcaatctcattatatctaagctcaaattttatataagataaccatccttgctgatccggcatccact |
338 |
Q |
| |
|
|||||| ||||||||| ||||| ||||| || ||||| || | || ||| ||||||| ||||| | |||| | |||||||| |||||||| | |
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|
| T |
33635764 |
gtaacaaaaagctcgaaaattcctctaagtcgttcgatttcattgtactttagttcatattttatgtaagagagccatgcatgctgatcaggcatccatt |
33635863 |
T |
|
| Q |
339 |
tcatccatctctcgaaaaccagcctcgcccccgcaacattgccaagcatctcctccatatgaatatacttataccacaactgatcaacccgcggcaaaag |
438 |
Q |
| |
|
|||||| |||||||||||| || | || || ||||||||||| |||| ||||||||| || |||| ||||||||| |||| |||||||| ||||| |
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|
| T |
33635864 |
ccatccacctctcgaaaacctctctaactccggcgacattgccaagaatcttctccatatgtatgtactcataccacaattgatggacccgcggtaaaag |
33635963 |
T |
|
| Q |
439 |
agtaaccgcgcgttcccaaacattccgagcatgattaataaacttattcttcatctca |
496 |
Q |
| |
|
| |||| ||||| || ||||||||| |||||||| | || |||||||||||||| |
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|
| T |
33635964 |
aataacagcgcgatcgtaaacattccttgcatgattgacgaatctattcttcatctca |
33636021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 2598039 - 2598110
Alignment:
| Q |
19 |
cttcggaatatgatcaagtgcaaatttataaatacacctcgcacgccctgcctccttacacctttcctcaaa |
90 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||| |||||| | ||||||| |||||||||||| |||| |
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|
| T |
2598039 |
cttcggaatataatcaattggaaatttataaatacacatcgcacactctgcctcattacacctttccacaaa |
2598110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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