View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21527_high_7 (Length: 484)

Name: NF21527_high_7
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21527_high_7
NF21527_high_7
[»] chr8 (4 HSPs)
chr8 (232-401)||(38945334-38945503)
chr8 (17-118)||(35839167-35839269)
chr8 (433-465)||(38945307-38945339)
chr8 (64-118)||(22816469-22816523)
[»] chr2 (5 HSPs)
chr2 (67-184)||(28267677-28267793)
chr2 (67-184)||(12774939-12775056)
chr2 (37-118)||(29270701-29270782)
chr2 (64-110)||(44788589-44788635)
chr2 (17-118)||(1193664-1193766)
[»] chr4 (3 HSPs)
chr4 (18-184)||(28969266-28969431)
chr4 (66-184)||(41868570-41868687)
chr4 (64-118)||(69316-69370)
[»] chr7 (3 HSPs)
chr7 (67-184)||(48654361-48654478)
chr7 (18-184)||(48576332-48576497)
chr7 (16-183)||(15874018-15874186)
[»] chr6 (4 HSPs)
chr6 (20-137)||(24992463-24992578)
chr6 (76-143)||(13777241-13777308)
chr6 (18-184)||(25005144-25005311)
chr6 (18-183)||(34636188-34636354)
[»] chr1 (6 HSPs)
chr1 (17-103)||(16074794-16074880)
chr1 (18-182)||(9537439-9537602)
chr1 (67-133)||(18474065-18474131)
chr1 (15-70)||(26317288-26317343)
chr1 (48-184)||(35762164-35762302)
chr1 (64-118)||(21264718-21264774)
[»] scaffold0413 (1 HSPs)
scaffold0413 (18-184)||(8840-9007)
[»] chr3 (5 HSPs)
chr3 (18-184)||(5004803-5004970)
chr3 (17-118)||(17542749-17542849)
chr3 (17-118)||(8730867-8730967)
chr3 (17-118)||(9082754-9082854)
chr3 (16-137)||(46404643-46404765)
[»] chr5 (2 HSPs)
chr5 (64-118)||(27026687-27026741)
chr5 (225-253)||(1752816-1752844)
[»] scaffold1838 (1 HSPs)
scaffold1838 (18-103)||(257-341)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 232 - 401
Target Start/End: Complemental strand, 38945503 - 38945334
Alignment:
Q  232 aatcaataaatcttacaaaagataaaagccattcctggccaatttatcctgtagatcaacattctggtgggatcgatgcaatttcatttcgagtgccgta 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  38945503 aatcaataaatcttacaaaagataaaagccattcctggccaatttatcctgtagatcaacattctggtgggatcgatgcaatttaatttcgagtgccgtc 38945404  T
Q  332 aattcccgtggctaccccatgtgattgaatttgtttgtatgtggattttcggcgtaaggcatggttgtct 401  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38945403 aattctcgtggctaccccatgtgattgaatttgtttgtatgtggattttcggcgtgaggcatggttgtct 38945334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 35839269 - 35839167
Alignment:
Q  17 tatcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgttt--ttcttttccaaagataag 114  Q
    |||||||||||||  |||||||| |||  ||| ||| |||| |||  ||||||||| ||||||| |||||||||||||||  |||||||| ||||| |||    
T  35839269 tatcatataaaactcaattaaaa-taatcactcttataaaatattagattttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaag 35839171  T
Q  115 aatt 118  Q
    ||||    
T  35839170 aatt 35839167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 465
Target Start/End: Complemental strand, 38945339 - 38945307
Alignment:
Q  433 ttgtctttattgaagaatccagcgtgtttgtac 465  Q
    |||||||||||||||||||||||||||||||||    
T  38945339 ttgtctttattgaagaatccagcgtgtttgtac 38945307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 22816469 - 22816523
Alignment:
Q  64 attttaccacgtaaatacatattttaattgtttttcttttccaaagataagaatt 118  Q
    |||||||||| |||| | ||||||||||||||||||||||| | ||| |||||||    
T  22816469 attttaccacataaaaaaatattttaattgtttttcttttcaagagacaagaatt 22816523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 28267677 - 28267793
Alignment:
Q  67 ttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatcttggttcttagcatggacgtttg 166  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||||||||||  |||||||||||| ||| ||||| | || ||||| |||||||| ||    
T  28267677 ttaccacctaaatatatattttagttgtttttcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatg 28267776  T
Q  167 aggaaaaaacccttacct 184  Q
     |||||||||||||||||    
T  28267777 -ggaaaaaacccttacct 28267793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 12774939 - 12775056
Alignment:
Q  67 ttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatcttggttcttagcatggacgtttg 166  Q
    ||||||| |||||| |||||||| |||||||||||| | ||||||||||||||  |||||||||||| ||| ||||| | || ||| | |||||||| ||    
T  12774939 ttaccacctaaatatatattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtatggacgtatg 12775038  T
Q  167 aggaaaaaacccttacct 184  Q
     ||||||| |||||||||    
T  12775039 gggaaaaagcccttacct 12775056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 29270782 - 29270701
Alignment:
Q  37 aaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaatt 118  Q
    ||||||| || ||||| |||| ||| |||||||| | |||| |||||||||||||||||||||||||| ||||| |||||||    
T  29270782 aaaataataatttttataaaatattaaattttactatgtaactacatattttaattgtttttcttttcaaaagacaagaatt 29270701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 44788635 - 44788589
Alignment:
Q  64 attttaccacgtaaatacatattttaattgtttttcttttccaaaga 110  Q
    ||||||||||||||  | ||||||||||||||||||||||| |||||    
T  44788635 attttaccacgtaagaaaatattttaattgtttttcttttcaaaaga 44788589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 1193766 - 1193664
Alignment:
Q  17 tatcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgttt--ttcttttccaaagataag 114  Q
    |||||||||||||  |||||||| |||  ||| ||| |||| |||  | ||||||| ||||||| |||||||||||||||  |||||||| ||||| |||    
T  1193766 tatcatataaaactcaattaaaa-taatcactcttataaaatattagactttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaag 1193668  T
Q  115 aatt 118  Q
    ||||    
T  1193667 aatt 1193664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 28969266 - 28969431
Alignment:
Q  18 atcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaat 117  Q
    |||||||| || |||||||||  ||| |||||||| ||||  || ||||||||||  |||||  |||||||| ||||||||||| || | ||| ||||||    
T  28969266 atcatatagaatataattaaac-taataacttttataaaatgttaaattttaccatataaattaatattttagttgtttttcttctcaacagacaagaat 28969364  T
Q  118 tttcacttctaattcataacttcatcttggttcttagcatggacgtttgaggaaaaaacccttacct 184  Q
    ||  || ||||||||||||| ||||| | || ||||| |||||||| ||||||||||||||||||||    
T  28969365 ttctacctctaattcataacatcatcctagtacttagtatggacgtatgaggaaaaaacccttacct 28969431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 41868687 - 41868570
Alignment:
Q  66 tttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatcttggttcttagcatggacgttt 165  Q
    ||||||| ||||||| |||||| |||||||| ||||||| | ||| ||||||||  |||||||||||| ||| ||||| |  | ||||| |||||||| |    
T  41868687 tttaccatgtaaatatatatttgaattgtttatcttttcaagagacaagaatttctacttctaattcacaacatcatcctaatacttagtatggacgtat 41868588  T
Q  166 gaggaaaaaacccttacct 184  Q
    | ||||||| | |||||||    
T  41868587 g-ggaaaaagcacttacct 41868570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 69370 - 69316
Alignment:
Q  64 attttaccacgtaaatacatattttaattgtttttcttttccaaagataagaatt 118  Q
    ||||||||||||||  | ||||||||||||||||||||||| | ||| |||||||    
T  69370 attttaccacgtaagaaaatattttaattgtttttcttttcaagagacaagaatt 69316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 48654361 - 48654478
Alignment:
Q  67 ttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatcttggttcttagcatggacgtttg 166  Q
    ||||||| |||||| |||||||| |||||||||||| | ||||| ||||||||  |||||||||||| ||| ||||| | || ||||| |||||||| ||    
T  48654361 ttaccacctaaatatatattttagttgtttttctttccaaaagacaagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtatg 48654460  T
Q  167 aggaaaaaacccttacct 184  Q
     |||||||||||||||||    
T  48654461 gggaaaaaacccttacct 48654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 48576497 - 48576332
Alignment:
Q  18 atcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaat 117  Q
    ||||||||| | |||||||||| ||| |||||| | || | ||| ||||||||||  ||||| ||||||||||||  |||||||||  |  |||||||||    
T  48576497 atcatataatatataattaaaactaataactttaataagatattaaattttaccatataaattcatattttaatt-attttctttttaacggataagaat 48576399  T
Q  118 tttcacttctaattcataacttcatcttggttcttagcatggacgtttgaggaaaaaacccttacct 184  Q
     |  || ||||||||||||| | |||   || ||||| |||||||| || ||||||| |||||||||    
T  48576398 ctctacctctaattcataacattatcccagtacttagtatggacgtatggggaaaaagcccttacct 48576332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 15874018 - 15874186
Alignment:
Q  16 atatcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgttt--ttcttttccaaagataa 113  Q
    ||||||||||||| |||||| ||| ||| |||||||| ||||| || ||||||||||  | ||| ||||||||| ||||||  |||||||| | | | ||    
T  15874018 atatcatataaaatataatt-aaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacatacaa 15874116  T
Q  114 gaattttcacttctaattcataacttcatcttggttcttagcatggacgtttgaggaaaaaacccttacc 183  Q
    |||| |  || ||||||||||||| | ||| | || ||||| | | |||| || ||||||| ||||||||    
T  15874117 gaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 15874186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 24992578 - 24992463
Alignment:
Q  20 catataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattt 119  Q
    |||||||||| ||||||||| |||  | ||||| |||||| | |||||||||||||||| | |||||||||||||||||||||| |||| | ||||||||    
T  24992578 catataaaacttaattaaaa-taatcagttttataaaagaataaattttaccacgtaaagaaatattttaattgtttttctttt-caaaaacaagaattt 24992481  T
Q  120 tcacttctaattcataac 137  Q
      |||| |||||||||||    
T  24992480 ctacttataattcataac 24992463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 13777241 - 13777308
Alignment:
Q  76 aaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattcataacttcatc 143  Q
    ||||| |||||||| |||||||||||| | ||||||||||||||  |||||||||||| ||| |||||    
T  13777241 aaatatatattttagttgtttttctttccaaaagataagaatttgtacttctaattcacaacatcatc 13777308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 25005311 - 25005144
Alignment:
Q  18 atcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttt--tcttttccaaagataaga 115  Q
    ||||||||||| |||||||||  ||| |||||||| ||||| || ||||||||||  | ||| | ||||||| |||||||  ||||||| | ||| ||||    
T  25005311 atcatataaaatataattaaac-taataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgttcttttcaacagacaaga 25005213  T
Q  116 attttcacttctaattcataacttcatcttggttcttagcatggacgtttgaggaaaaaacccttacct 184  Q
    || |  || ||||||||||||| | ||||| || ||||| | | |||| || ||||||||| |||||||    
T  25005212 atctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttacct 25005144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 34636354 - 34636188
Alignment:
Q  18 atcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgttt--ttcttttccaaagataaga 115  Q
    ||||||||||| |||||| ||| ||| |||||||| ||||| || ||||||||||  | ||| ||||||||| ||||||  |||||||| | ||| ||||    
T  34636354 atcatataaaatataatt-aaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaga 34636256  T
Q  116 attttcacttctaattcataacttcatcttggttcttagcatggacgtttgaggaaaaaacccttacc 183  Q
    || |  || ||||||||||||| | ||| | || ||||| | | |||| || ||||||| ||||||||    
T  34636255 atctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 34636188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 16074880 - 16074794
Alignment:
Q  17 tatcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttctttt 103  Q
    |||||||||||| |||||||||  ||| |||||||| |||||||| ||||||| ||  | ||| |||||||||||||||||||||||    
T  16074880 tatcatataaaatataattaaatctaataacttttataaaagattaaattttaacatatgaattcatattttaattgtttttctttt 16074794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 9537439 - 9537602
Alignment:
Q  18 atcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaat 117  Q
    ||||||||||| |||||||||  ||| |||||||| ||||| || |||||||| |  |||||  |||||||| ||||||||||| || | ||| ||||||    
T  9537439 atcatataaaatataattaaac-taataacttttataaaaggttaaattttacaatataaatttatattttacttgtttttcttctcaacagacaagaat 9537537  T
Q  118 tttcacttctaattcataacttcatcttggttcttagcatggacgtttgaggaaaaaacccttac 182  Q
     |  || ||||||||||||| ||||| | || || || |||||||| ||||| |||| |||||||    
T  9537538 ctatacctctaattcataacatcatcctagtactcagtatggacgtatgaggtaaaagcccttac 9537602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 18474065 - 18474131
Alignment:
Q  67 ttaccacgtaaatacatattttaattgtttttcttttccaaagataagaattttcacttctaattca 133  Q
    ||||||| |||||| ||||||||||||||||||||| | ||||| ||||||||  ||||||||||||    
T  18474065 ttaccacctaaatatatattttaattgtttttctttccaaaagacaagaatttgtacttctaattca 18474131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 26317343 - 26317288
Alignment:
Q  15 aatatcatataaaacataattaaaaataacaacttttacaaaagattgaattttac 70  Q
    |||||||||||| ||| |||||| |||||| ||||||| |||||||| ||||||||    
T  26317343 aatatcatataatacaaaattaagaataaccacttttagaaaagattaaattttac 26317288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 35762164 - 35762302
Alignment:
Q  48 ttttacaaaagattgaattttaccacgtaaatacatattttaattgtttt--tcttttccaaagataagaattttcacttctaattcataacttcatctt 145  Q
    ||||| ||||| || ||||||||||  ||||| ||||||||| |||||||  ||||||| | | | |||||| |  || ||||||||||||| | ||| |    
T  35762164 ttttataaaaggttaaattttaccatataaattcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcct 35762263  T
Q  146 ggttcttagcatggacgtttgaggaaaaaacccttacct 184  Q
     || ||||| |||||||| || ||||||| |||||||||    
T  35762264 agtacttagtatggacgtatggggaaaaagcccttacct 35762302  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 21264718 - 21264774
Alignment:
Q  64 attttaccacgtaaatacatattttaattgttt--ttcttttccaaagataagaatt 118  Q
    ||||||||| ||||||| |||||||||||||||  |||||||| ||||| |||||||    
T  21264718 attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaatt 21264774  T

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Target: scaffold0413 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 9007 - 8840
Alignment:
Q  18 atcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttt--tcttttccaaagataaga 115  Q
    ||||||||||| |||||||||  ||| |||| ||| ||||| || |||||||||| || ||| ||||||||| |||||||  ||||||| | ||| ||||    
T  9007 atcatataaaatataattaaac-taataactgttataaaaggttaaattttaccatgtgaattcatattttagttgttttgttcttttcaacagacaaga 8909  T
Q  116 attttcacttctaattcataacttcatcttggttcttagcatggacgtttgaggaaaaaacccttacct 184  Q
    ||||  || ||||||||||||| | ||| | || ||||| | | |||| || ||||||| |||||||||    
T  8908 atttatacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 8840  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 5004803 - 5004970
Alignment:
Q  18 atcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttt--tcttttccaaagataaga 115  Q
    ||||||||||| |||||||||  ||| |||||||| ||||| || ||||| ||||  ||||| ||||||||| |||||||  ||||||| ||||| ||||    
T  5004803 atcatataaaatataattaaac-taataacttttataaaaggttaaatttcaccatataaattcatattttagttgttttgttcttttcaaaagacaaga 5004901  T
Q  116 attttcacttctaattcataacttcatcttggttcttagcatggacgtttgaggaaaaaacccttacct 184  Q
    || |  || ||||||||||||| | ||| | || ||||| | | |||| || ||||||| |||||||||    
T  5004902 atctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 5004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 17542749 - 17542849
Alignment:
Q  17 tatcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaa 116  Q
    |||||||||||||  |||||||| |||| ||| ||| |||| |||  ||||||||||||||  | ||||||||||||||||||||||| | ||| |||||    
T  17542749 tatcatataaaactcaattaaaa-taaccactcttagaaaatattagattttaccacgtaagaaaatattttaattgtttttcttttcaagagacaagaa 17542847  T
Q  117 tt 118  Q
    ||    
T  17542848 tt 17542849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 8730967 - 8730867
Alignment:
Q  17 tatcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaa 116  Q
    |||||||||||||||||| | || ||| |||||||| |||||||| |||||||||  | ||||| | ||||| ||| ||||||||||  ||||| |||||    
T  8730967 tatcatataaaacataatgagaattaataacttttataaaagattaaattttaccctgaaaatatacatttt-attatttttctttttaaaagacaagaa 8730869  T
Q  117 tt 118  Q
    ||    
T  8730868 tt 8730867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 9082854 - 9082754
Alignment:
Q  17 tatcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttcttttccaaagataagaa 116  Q
    |||||||||||||||||| | || ||| |||||||| |||||||| |||||||||  | ||||| | ||||| ||| ||||||||||  ||||| |||||    
T  9082854 tatcatataaaacataatgagaattaataacttttataaaagattaaattttaccctgaaaatatacatttt-attatttttctttttaaaagacaagaa 9082756  T
Q  117 tt 118  Q
    ||    
T  9082755 tt 9082754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 46404643 - 46404765
Alignment:
Q  16 atatcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgttt--ttcttttccaaagataa 113  Q
    ||||||||||||| |||||| ||| ||| |||||||| ||||| || ||||||||||  | ||| ||||||||| ||||||  |||||||| | ||| ||    
T  46404643 atatcatataaaatataatt-aaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaa 46404741  T
Q  114 gaattttcacttctaattcataac 137  Q
    |||| |  || |||||||||||||    
T  46404742 gaatctctacctctaattcataac 46404765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 27026741 - 27026687
Alignment:
Q  64 attttaccacgtaaatacatattttaattgtttttcttttccaaagataagaatt 118  Q
    ||||||||||||||| | |||| |||||||||||||||||| ||||| |||||||    
T  27026741 attttaccacgtaaagaaatatattaattgtttttcttttcaaaagacaagaatt 27026687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 1752844 - 1752816
Alignment:
Q  225 aatcaataatcaataaatcttacaaaaga 253  Q
    |||||||||||||||||||||||||||||    
T  1752844 aatcaataatcaataaatcttacaaaaga 1752816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 341 - 257
Alignment:
Q  18 atcatataaaacataattaaaaataacaacttttacaaaagattgaattttaccacgtaaatacatattttaattgtttttctttt 103  Q
    ||||||||||| |||||||||  ||| |||||||| ||||| || ||||||||||  || ||  ||||||||||| ||||||||||    
T  341 atcatataaaatataattaaac-taataacttttataaaaggttaaattttaccatatagatttatattttaattatttttctttt 257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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