View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_high_8 (Length: 474)
Name: NF21527_high_8
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 31449675 - 31450111
Alignment:
| Q |
16 |
aatattgaccagattcaacactatgttacatatgctattattnnnnnnntgtgagaaattgtcactccaaatggaggatactcaacaactctgtcctggt |
115 |
Q |
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| T |
31449675 |
aatattgaccagattcaacactatgttacatatgctattattaaaaaaatgtgagaaattgtcactccacttc---------caacaactctgtcctggt |
31449765 |
T |
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| Q |
116 |
gatagaatgggtaacttatttggcgaaaggaattgagattggaggttatggagagacttatagtctttgtatagtagg-tcattcaaaatatgggagaac |
214 |
Q |
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| T |
31449766 |
gatagaatgggtaacttatttggcgaaaggaattgagattggaggttatggagagacttatagtctttgtatagtagggtcattcaaaatatgggagaac |
31449865 |
T |
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| Q |
215 |
cgtggtgtaattactgtgagcaat--gggatgagtcattatgtgttgagagatttccccatagatgttaaagtttgttaccgccttttagaagtagggca |
312 |
Q |
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| T |
31449866 |
cgtggtgtaattactgtgagcaatatgggatgagtcattatgtgttgagagatttccccatagatgttaaagtttgttaccgccttttagaagtagggca |
31449965 |
T |
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| Q |
313 |
tcatgcatgcaagtttctttttgtatgatttagagcaatgaaactggattccctccaactacaatgattcaaccagccagtagcacgtgtaagaactgac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31449966 |
tcatgcatgcaagtttctttttgtatgatttagagcaatgaaactggattccctccaactacaatgattcaaccagccagtagcacgtgtaagaactgac |
31450065 |
T |
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| Q |
413 |
ttagtgaaccatttcatatcatggaaagataccaaatgttctgttg |
458 |
Q |
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| T |
31450066 |
ttagtgaaccatttcatatcatggaaagataccaaatgttctgttg |
31450111 |
T |
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