View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21527_low_1 (Length: 585)

Name: NF21527_low_1
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21527_low_1
NF21527_low_1
[»] chr5 (7 HSPs)
chr5 (13-544)||(1008541-1009059)
chr5 (257-319)||(19186430-19186492)
chr5 (267-311)||(1012226-1012270)
chr5 (242-305)||(10950919-10950982)
chr5 (267-317)||(42948178-42948228)
chr5 (264-321)||(8609195-8609252)
chr5 (264-296)||(7209672-7209704)
[»] chr2 (11 HSPs)
chr2 (239-312)||(74380-74453)
chr2 (264-312)||(529613-529661)
chr2 (267-318)||(8194276-8194327)
chr2 (265-317)||(528909-528961)
chr2 (264-304)||(34238828-34238868)
chr2 (237-304)||(13545340-13545407)
chr2 (265-304)||(34239582-34239621)
chr2 (237-304)||(41320020-41320087)
chr2 (236-302)||(32361968-32362034)
chr2 (235-304)||(41320751-41320820)
chr2 (241-304)||(8143321-8143385)
[»] chr3 (10 HSPs)
chr3 (258-310)||(10973117-10973169)
chr3 (267-318)||(15274053-15274104)
chr3 (265-304)||(23310511-23310550)
chr3 (265-304)||(32982279-32982318)
chr3 (267-317)||(40872921-40872971)
chr3 (252-305)||(33639639-33639692)
chr3 (267-312)||(40877273-40877318)
chr3 (267-317)||(15269703-15269753)
chr3 (235-304)||(37065978-37066046)
chr3 (264-305)||(52341346-52341387)
[»] chr4 (4 HSPs)
chr4 (237-320)||(53994420-53994503)
chr4 (252-318)||(54157279-54157345)
chr4 (265-310)||(22405335-22405380)
chr4 (265-305)||(38942015-38942055)
[»] chr6 (4 HSPs)
chr6 (235-309)||(20349313-20349389)
chr6 (267-318)||(11324749-11324800)
chr6 (267-318)||(13220879-13220930)
chr6 (267-317)||(13225225-13225275)
[»] chr8 (7 HSPs)
chr8 (267-317)||(5389671-5389721)
chr8 (267-318)||(5390170-5390221)
chr8 (238-304)||(19971257-19971323)
chr8 (238-304)||(21021486-21021552)
chr8 (240-304)||(19970563-19970627)
chr8 (240-304)||(21022182-21022246)
chr8 (268-304)||(32319831-32319867)
[»] scaffold0021 (1 HSPs)
scaffold0021 (260-312)||(120569-120621)
[»] chr1 (7 HSPs)
chr1 (265-304)||(39773408-39773447)
chr1 (235-304)||(17238447-17238516)
chr1 (265-304)||(4968932-4968971)
chr1 (235-302)||(6632056-6632123)
chr1 (266-305)||(19990286-19990325)
chr1 (252-317)||(29981268-29981333)
chr1 (264-304)||(16519379-16519419)
[»] chr7 (1 HSPs)
chr7 (267-318)||(12263363-12263414)


Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 13 - 544
Target Start/End: Complemental strand, 1009059 - 1008541
Alignment:
Q  13 aatatgtttgtaaataattgcaggaggaaagttaaaagaagaaacaaaaccaacgaaaaccattactagaattaatgaattgaaatgggtgatgatagca 112  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1009059 aatatgtttgtaaataattgcaggaggaaagttaaa-gaagaaacaaaactaacgaaaaccattactagaattaatgaattgaaatgggtgatgatagca 1008961  T
Q  113 tccaaaaaatgagagtgaaacgatacatgggagaggttagatttttcatcaattgcatgaagcaaacaaatgaatagaagagaaatactgtaggagaaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  1008960 tccaaaaaatgagagtgaaacgatacatgggagaggttagatttttcatcaattgcaggaagcaaacaaatgaatagaagagaaatagtgtaggagaaca 1008861  T
Q  213 taatttaggggtcatgtgtttcaaccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatccc 312  Q
    |||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||           |||||||| ||| |||||||||||||||    
T  1008860 taatttagggttcatgtgtttgaaccattagattaaaataaaataaagggataagatttgg-----------agacttac-cttagagtcaatggatccc 1008773  T
Q  313 ctctcttattttattatattttaggttgtattaaaaaactgatgattaatcttttgcacaattttatattgaagattatatgcattaaaaattaacatac 412  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1008772 tcatcttattttattatattttaggttgtattaaaaaactgatgattaatcttttgcacaattttatattgaagattatatgcattaaaaattaacatac 1008673  T
Q  413 acacttgcatggatacaaacatgcacttgcgcatttgtttaaaatagaacgccattatcataattcacacataacattcaaaatctcagagataactcta 512  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1008672 acactcgcatgtatacaaacatgcacttgtgcatttgtttaaaatagaacgtcattatcataattcacacataacattcaaaatctcagagataactcta 1008573  T
Q  513 tctatgcagttagggagggaacccacataaac 544  Q
    |||||||||||||||||||||||||| |||||    
T  1008572 tctatgcagttagggagggaacccacttaaac 1008541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 19186492 - 19186430
Alignment:
Q  257 aaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctctt 319  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||||| |||| | ||||||    
T  19186492 aaagggttaagatttggagtaagtctttagacttactcttggagtcaattgatctcttctctt 19186430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 1012226 - 1012270
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcc 311  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||    
T  1012226 gatttgaagtaagtcaataaacttactcttggagtcaatgaatcc 1012270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 305
Target Start/End: Original strand, 10950919 - 10950982
Alignment:
Q  242 agattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaat 305  Q
    ||||||||| ||||| || || |||||||||||||||||  | ||| |||||||||||||||||    
T  10950919 agattaaaagaaaattaatggttaagatttggagtaagtacaaagatttactcttggagtcaat 10950982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 42948178 - 42948228
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 317  Q
    |||| ||||||| ||  ||||||||||||||||||||||||||||| ||||    
T  42948178 gattgggagtaactctttagacttactcttggagtcaatggatcccttctc 42948228  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 8609252 - 8609195
Alignment:
Q  264 taagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctcttat 321  Q
    ||||||||||||||| |   || ||||||||||||||||||||||||||  |||||||    
T  8609252 taagatttggagtaactatttatacttactcttggagtcaatggatccctcctcttat 8609195  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 7209672 - 7209704
Alignment:
Q  264 taagatttggagtaagtcaatagacttactctt 296  Q
    ||||||||||||||||| |||||||||||||||    
T  7209672 taagatttggagtaagttaatagacttactctt 7209704  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 74453 - 74380
Alignment:
Q  239 attagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatccc 312  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||| ||||| || ||||||||| |||||    
T  74453 attagattaaaacaaaattaagggataaggtttagagtaagtcaatagagttacttttagagtcaatgaatccc 74380  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 529613 - 529661
Alignment:
Q  264 taagatttggagtaagtcaatagacttactcttggagtcaatggatccc 312  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||    
T  529613 taagatttggagtaagtctttatacttactcttggagtcaatggatccc 529661  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 8194276 - 8194327
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 318  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||| |||||    
T  8194276 gatttggagtaactctttagacttactcttggagtcaatggatcccttctct 8194327  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 528961 - 528909
Alignment:
Q  265 aagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 317  Q
    |||||||||||||||||  || |||||||||||||||| ||||||||| ||||    
T  528961 aagatttggagtaagtctttatacttactcttggagtccatggatcccttctc 528909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 34238868 - 34238828
Alignment:
Q  264 taagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  34238868 taagatttggagtaagtctatagacttacttttggagtcaa 34238828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 13545340 - 13545407
Alignment:
Q  237 ccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||||||||||||| || || || ||   |||||||||||||||| ||| ||||||||||||||||||    
T  13545340 ccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtcaa 13545407  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 34239582 - 34239621
Alignment:
Q  265 aagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  34239582 aagatttggagtaaatctatagacttactcttggagtcaa 34239621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 41320087 - 41320020
Alignment:
Q  237 ccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||||||||||||| || || || ||   |||||||||||||||| ||| ||||||||||||||||||    
T  41320087 ccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtcaa 41320020  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 32361968 - 32362034
Alignment:
Q  236 accattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtc 302  Q
    |||||||||||||||||||||| | ||    ||||||||  ||||| ||||||||||||||||||||    
T  32361968 accattagattaaaacaaaatagatggtagtgatttggaaaaagtctatagacttactcttggagtc 32362034  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 41320751 - 41320820
Alignment:
Q  235 aaccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||||||||||||||| || || || ||   |||||||||||||||| ||| ||||||| ||||||||||    
T  41320751 aaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactattggagtcaa 41320820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 8143321 - 8143385
Alignment:
Q  241 tagattaaaacaaaataaagggataagatttggagtaagtcaatagacttact-cttggagtcaa 304  Q
    |||||||||||| ||| |||||||  |||||||||||| |||| ||| ||||| |||||||||||    
T  8143321 tagattaaaacataatgaagggatgtgatttggagtaactcaaaagagttactccttggagtcaa 8143385  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 10973117 - 10973169
Alignment:
Q  258 aagggataagatttggagtaagtcaatagacttactcttggagtcaatggatc 310  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  10973117 aagggataagatttggagtaagtcaatagagttactcttagagtcaatggatc 10973169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 15274053 - 15274104
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 318  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| |||||    
T  15274053 gatttggagtaagtgtttagacttactcttggagtcaatggatcccttctct 15274104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 23310550 - 23310511
Alignment:
Q  265 aagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  23310550 aagatttggagtaagtctatagacttactcttggagtcaa 23310511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 32982318 - 32982279
Alignment:
Q  265 aagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  32982318 aagatttggagtaagtctatagacttactcttggagtcaa 32982279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 40872971 - 40872921
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 317  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| ||||    
T  40872971 gatttggagtaagtgtttagacttactcttggagtcaatggatcccttctc 40872921  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 33639639 - 33639692
Alignment:
Q  252 aaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaat 305  Q
    ||||| ||||| |||||| |||||||||||  ||||||||||||||||||||||    
T  33639639 aaaatgaagggttaagatctggagtaagtctttagacttactcttggagtcaat 33639692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 40877273 - 40877318
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatccc 312  Q
    ||||||||||||||   |||||||||||||||||||||||||||||    
T  40877273 gatttggagtaagtgtttagacttactcttggagtcaatggatccc 40877318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 15269753 - 15269703
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 317  Q
    |||||| |||||||   ||||||||||||||||||||||||||||| ||||    
T  15269753 gatttgaagtaagtgtttagacttactcttggagtcaatggatcccttctc 15269703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 37066046 - 37065978
Alignment:
Q  235 aaccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||| ||||||||||| | ||| |||||  ||||||||||||||||  | ||||||||||||||||||||    
T  37066046 aaccgttagattaaaa-agaattaagggcaaagatttggagtaagtttagagacttactcttggagtcaa 37065978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 52341387 - 52341346
Alignment:
Q  264 taagatttggagtaagtcaatagacttactcttggagtcaat 305  Q
    ||||||||||||||| |  |||||||||||||||||||||||    
T  52341387 taagatttggagtaattgtatagacttactcttggagtcaat 52341346  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 237 - 320
Target Start/End: Original strand, 53994420 - 53994503
Alignment:
Q  237 ccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctctta 320  Q
    ||||||||| |||||||||| |||||  | |||||||||||| ||  ||||||||||| ||||||||||||||||| |||||||    
T  53994420 ccattagatcaaaacaaaattaagggtcatgatttggagtaactctttagacttactcctggagtcaatggatcccttctctta 53994503  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 54157345 - 54157279
Alignment:
Q  252 aaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 318  Q
    ||||| |||||  |||||||||||||||||  ||||||||||||||||||| |||||||| ||||||    
T  54157345 aaaatgaagggtcaagatttggagtaagtctttagacttactcttggagtcgatggatcctctctct 54157279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 22405335 - 22405380
Alignment:
Q  265 aagatttggagtaagtcaatagacttactcttggagtcaatggatc 310  Q
    ||||||||||||||||   |||||||||||||| ||||||||||||    
T  22405335 aagatttggagtaagtatttagacttactcttgaagtcaatggatc 22405380  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 38942015 - 38942055
Alignment:
Q  265 aagatttggagtaagtcaatagacttactcttggagtcaat 305  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  38942015 aagatttggagtaagttattacacttactcttggagtcaat 38942055  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 20349313 - 20349389
Alignment:
Q  235 aaccattagattaaaacaaaataaagggataagatttggagta--agtcaatagacttactcttggagtcaatggat 309  Q
    |||||||||||||| |||| || ||||||||||||||||||||  |  ||||| |||||||||||||||||||||||    
T  20349313 aaccattagattaagacaacatgaagggataagatttggagtaacacgcaataaacttactcttggagtcaatggat 20349389  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 11324800 - 11324749
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 318  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| |||||    
T  11324800 gatttggagtaagtgtttagacttactcttggagtcaatggatcccttctct 11324749  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 13220930 - 13220879
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 318  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| |||||    
T  13220930 gatttggagtaagtgtttagacttactcttggagtcaatggatcccttctct 13220879  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 13225225 - 13225275
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 317  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| ||||    
T  13225225 gatttggagtaagtgtttagacttactcttggagtcaatggatcccttctc 13225275  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 5389721 - 5389671
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 317  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  5389721 gatttggagtaagtctttagacttactcttggagtcaatggatcccttctc 5389671  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 5390170 - 5390221
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 318  Q
    |||||||||||||||  |||||||||||| |||||||||||||||| |||||    
T  5390170 gatttggagtaagtctttagacttactctaggagtcaatggatcccttctct 5390221  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 19971257 - 19971323
Alignment:
Q  238 cattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||| ||||||||||||||| ||||||  ||||| |||||| |||| ||| ||||||||||||||||    
T  19971257 cattggattaaaacaaaatagagggatgtgatttagagtaactcaaaagagttactcttggagtcaa 19971323  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 21021552 - 21021486
Alignment:
Q  238 cattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||| ||||||||||||||| ||||||  ||||| |||||| |||| ||| ||||||||||||||||    
T  21021552 cattggattaaaacaaaatagagggatgtgatttagagtaactcaaaagagttactcttggagtcaa 21021486  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 304
Target Start/End: Complemental strand, 19970627 - 19970563
Alignment:
Q  240 ttagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||||||||||| ||||  ||||||  |||||||||||| |||| ||| ||||||||||||||||    
T  19970627 ttagattaaaactaaatggagggatgtgatttggagtaactcaaaagagttactcttggagtcaa 19970563  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 304
Target Start/End: Original strand, 21022182 - 21022246
Alignment:
Q  240 ttagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||||||||||| ||||  ||||||  |||||||||||| |||| ||| ||||||||||||||||    
T  21022182 ttagattaaaactaaatggagggatgtgatttggagtaactcaaaagagttactcttggagtcaa 21022246  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 32319831 - 32319867
Alignment:
Q  268 atttggagtaagtcaatagacttactcttggagtcaa 304  Q
    ||||||||||||| |||||||||||||||||||||||    
T  32319831 atttggagtaagttaatagacttactcttggagtcaa 32319867  T

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Target: scaffold0021 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 120569 - 120621
Alignment:
Q  260 gggataagatttggagtaagtcaatagacttactcttggagtcaatggatccc 312  Q
    |||||||||||||||||||||||||||| |||||| | |||||||||| ||||    
T  120569 gggataagatttggagtaagtcaatagagttactcatagagtcaatgggtccc 120621  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 39773408 - 39773447
Alignment:
Q  265 aagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  39773408 aagatttggagtaagttaatagacttactcttggagtcaa 39773447  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 17238447 - 17238516
Alignment:
Q  235 aaccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    |||||||||||||||| || || || ||   |||||||||||||||| ||| ||||||||||||||||||    
T  17238447 aaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtcaa 17238516  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 4968932 - 4968971
Alignment:
Q  265 aagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  4968932 aagatttggagtaagtttatagacttactcttggagtcaa 4968971  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 6632056 - 6632123
Alignment:
Q  235 aaccattagattaaaacaaaataaagggataagatttggagtaagtcaatagacttactcttggagtc 302  Q
    |||||||||||||||| || || || ||   |||||||||||||||| ||| ||||||||||||||||    
T  6632056 aaccattagattaaaataagatgaaaggtggagatttggagtaagtctataaacttactcttggagtc 6632123  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 19990325 - 19990286
Alignment:
Q  266 agatttggagtaagtcaatagacttactcttggagtcaat 305  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  19990325 agatttggagtaagtctttagacttactcttggagtcaat 19990286  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 29981333 - 29981268
Alignment:
Q  252 aaaataaagggataagatttggagtaagtcaatagacttactcttggagtcaatggatcccctctc 317  Q
    |||||| |||| ||||||  ||||||||||  || |||||||||| ||||||||||||||| ||||    
T  29981333 aaaatagagggttaagatgcggagtaagtctttacacttactcttagagtcaatggatcccttctc 29981268  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 16519379 - 16519419
Alignment:
Q  264 taagatttggagtaagtcaatagacttactcttggagtcaa 304  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  16519379 taagatttggagtaagttattacacttactcttggagtcaa 16519419  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 12263363 - 12263414
Alignment:
Q  267 gatttggagtaagtcaatagacttactcttggagtcaatggatcccctctct 318  Q
    |||||| |||||||   ||||||||||||||||||||||||||||| |||||    
T  12263363 gatttgtagtaagtgtttagacttactcttggagtcaatggatcccttctct 12263414  T

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