View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21527_low_10 (Length: 430)
Name: NF21527_low_10
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 24435725 - 24435310
Alignment:
| Q |
1 |
tgtatattactattggtatcaatgaaggcatgtttgtggttggtataattatatgctcagaagaagttttgctaagtttgctctcactttcattcgctct |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
24435725 |
tgtatattattattggtatcaatgaaggcatgtttgtggttggtataattatatgctcagaagaagttttgctaagtttgttctcactttcatccgctct |
24435626 |
T |
|
| Q |
101 |
cttatatgaaaattgtcttttaagggactttctgataattttatagttgtcgatcattctacgacatcaaattgtatgacacgtcagatagaataactca |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24435625 |
cttatatgaaaattgtcttttaagggattttctgataattttatagttgttgatcattctacgacatcaaattgtatgacacgtcagatagaataactca |
24435526 |
T |
|
| Q |
201 |
catcaaccgtattctaaaaattaatcatcttcaacatgttgcaaagtattctaaaaattggagatactcctcataattaatcctacgaacggtgaaatcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24435525 |
catcaaccgtattctaaaaattaatcatcttcaacatgttgcaaagtattctaaaaattggagatactcctcataattaatcctacgaacggtgaaatcg |
24435426 |
T |
|
| Q |
301 |
gcaaaatttggaggagattctagaaatgaattttatcatgtattataaagctggctctgaaaattcaatcagaaacatgtgttagcttggatgaaaccga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24435425 |
gcaaaatttggaggagattctagaaatgaattttatcatgtattataaagttggctctggaaattcaatcagaaacatgtgttagcttggatgaaaccga |
24435326 |
T |
|
| Q |
401 |
caaga-ttaatataaa |
415 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
24435325 |
caagacttaatataaa |
24435310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 413
Target Start/End: Complemental strand, 42344785 - 42344745
Alignment:
| Q |
373 |
aaacatgtgttagcttggatgaaaccgacaagattaatata |
413 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
42344785 |
aaacatgtgttagcttggaagaatccgacaagattgatata |
42344745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 218 - 415
Target Start/End: Complemental strand, 7115201 - 7115004
Alignment:
| Q |
218 |
aaattaatcatcttcaacatgttgcaaagtattctaaaaattggagatactcctcataattaatcctacgaacggtgaaatcggcaaaatttggaggaga |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7115201 |
aaattaaacatcttcaacatgttgcaaagtattctaaaaattggagatactcctcataattaatcctacgaacggtgaagtcggcaaaatttggaggaga |
7115102 |
T |
|
| Q |
318 |
ttctagaaatgaattttatcatgtattataaagctggctctgaaaattcaatcagaaacatgtgttagcttggatgaaaccgacaagattaatataaa |
415 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7115101 |
ttctagaaatatattttatcatgtattataaggctggctctgaaaattcaattagaaacatgtgttagcttggatgaagccgacaagattaatataaa |
7115004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 217 - 415
Target Start/End: Original strand, 45894314 - 45894511
Alignment:
| Q |
217 |
aaaattaatcatcttcaacatgttgcaaagtattctaaaaattggagatactcctcataattaatcctacgaacggtgaaatcggcaaaatttggaggag |
316 |
Q |
| |
|
|||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
45894314 |
aaaattaaacatcttaaacttattgcaaagtattctaaaaattggagatactcctcataattaatcctacgaacggtgatgtcggcaaaacttggaggag |
45894413 |
T |
|
| Q |
317 |
attctagaaatgaattttatcatgtattataaagctggctctgaaaattcaatcagaaacatgtgttagcttggatgaaaccgacaagattaatataaa |
415 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
45894414 |
actctagaaatcaattttatcatgtattataaagctggctctgaaaattc-attagaaacatgtgttagtttggatgaaaccgacaagatttatataaa |
45894511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University