View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_13 (Length: 414)
Name: NF21527_low_13
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_13 |
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| [»] scaffold2127 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 244 - 403
Target Start/End: Complemental strand, 6663723 - 6663564
Alignment:
| Q |
244 |
attaattattcatggtttttggatcgttattggattttgaaaatttgaagaatttgattgaaatggggaaagaagttgaggatgttgaagaaggtgagat |
343 |
Q |
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| T |
6663723 |
attaattattcatggtttttggatcgttattggattttgaaatttcgaagaatttgattgaaatggggaaagaagttgaggatgttgaagaaggtgagat |
6663624 |
T |
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| Q |
344 |
ttctgattctgcttcattggaagagattaccgaagaagatttcaaaaagggtgatgatgt |
403 |
Q |
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| T |
6663623 |
ttctgattctgcttcattggaagagattactgaagaagatttcaaaaagggtgatgatgt |
6663564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 25 - 194
Target Start/End: Complemental strand, 6663942 - 6663773
Alignment:
| Q |
25 |
ctgaaaattccgatcaccggaaactcgatccgccaccgcgaataacggattttgttctaacactaatagatctagaagaatccaaatcggaaattgaaaa |
124 |
Q |
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| T |
6663942 |
ctgaaaattccgatcaccggaaactcgatccgccaccgcgaataacggattttgttctaacattaatagatctagaagaatccaaatcggaaattgaaaa |
6663843 |
T |
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| Q |
125 |
tttgtaaccctaatttattaattattaacctaannnnnnncttcaattttgaatacgaaaccgattaacg |
194 |
Q |
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| T |
6663842 |
tttgtaaccctaatttattaattattaacctaatttttttcttcaattttgaatacgtaaccgattaacg |
6663773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 46674109 - 46674195
Alignment:
| Q |
273 |
ttggattttgaaaatttgaagaatttgattgaaatggggaaagaagttgaggatgttgaagaaggtgagatttctgattctgcttcatt |
361 |
Q |
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| T |
46674109 |
ttggattttgaaaatc-gaagaatttgattgaaatggg-aaagaagttgaggatgttgaagaaggtgagatttctgattatgcttcatt |
46674195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 46673897 - 46673958
Alignment:
| Q |
25 |
ctgaaaattccgatcaccggaaactcgatccgccaccgcgaataacggattttgttctaaca |
86 |
Q |
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| T |
46673897 |
ctgaaaattccgatcaccggtaactcgatccgccaccacgaaaaacggattttgttgtaaca |
46673958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 248 - 361
Target Start/End: Complemental strand, 5688144 - 5688033
Alignment:
| Q |
248 |
attattcatggtttttggatcgttattggattttgaaaatttgaagaatttgattgaaatggggaaagaagttgaggatgttgaagaaggtgagatttct |
347 |
Q |
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| T |
5688144 |
attattcatggtttttggattgtttttggattttgaaaatt-gaagaatttgattgaaatggg-aaagaagttgaggatgttgaagaaggtgagatttct |
5688047 |
T |
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| Q |
348 |
gattctgcttcatt |
361 |
Q |
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|||| ||||||||| |
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| T |
5688046 |
gattttgcttcatt |
5688033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 5688346 - 5688285
Alignment:
| Q |
25 |
ctgaaaattccgatcaccggaaactcgatccgccaccgcgaataacggattttgttctaaca |
86 |
Q |
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| T |
5688346 |
ctgaaaattccgatcaccagtaactcgatacgccaccgcgaaaaacggatttcgttgtaaca |
5688285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 5688282 - 5688199
Alignment:
| Q |
110 |
atcggaaattgaaaatttgtaaccctaatttattaa-ttattaacctaannnnnnncttcaattttgaatacgaaaccgattaa |
192 |
Q |
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|||| ||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||| | ||||||||||| |
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| T |
5688282 |
atcgaaaattgaaaatttgtaaccttaacttattaatttattaacctaatttgtttgttcaattttgaatccaaaaccgattaa |
5688199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 403
Target Start/End: Complemental strand, 49315657 - 49315559
Alignment:
| Q |
305 |
aatggggaaagaagttgaggatgttgaagaaggtgagatttctgattctgcttcattggaagagattaccgaagaagatttcaaaaagggtgatgatgt |
403 |
Q |
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| T |
49315657 |
aatggtgaaagaggttgaggatgtggaagagggagagatttctgatacttcttcagtgaaagtgattatcgaaaaggatctcaataaggttgatcatgt |
49315559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 361
Target Start/End: Original strand, 31624532 - 31624618
Alignment:
| Q |
273 |
ttggattttgaaaatttgaagaatttgattgaaatggggaaagaagttgaggatgttgaagaaggtgagatttctgattctgcttcatt |
361 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
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| T |
31624532 |
ttggattttgaaaatca-aagaatttgattgaaatggg-aaagaagttgaggatgatgaagaatgtgagatttctgattatgcttcatt |
31624618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 31624312 - 31624367
Alignment:
| Q |
25 |
ctgaaaattccgatcaccggaaactcgatccgccaccgcgaataacggattttgtt |
80 |
Q |
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| T |
31624312 |
ctgaaaattccgatcaccggtaactcgatccgccactgcgaaaaatggattttgtt |
31624367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2127 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold2127
Description:
Target: scaffold2127; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 221 - 160
Alignment:
| Q |
25 |
ctgaaaattccgatcaccggaaactcgatccgccaccgcgaataacggattttgttctaaca |
86 |
Q |
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||||||||||||||||| || ||||||||| |||||| |||| ||||||||||||| ||||| |
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| T |
221 |
ctgaaaattccgatcactggtaactcgatctgccaccacgaaaaacggattttgttgtaaca |
160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 47136393 - 47136332
Alignment:
| Q |
25 |
ctgaaaattccgatcaccggaaactcgatccgccaccgcgaataacggattttgttctaaca |
86 |
Q |
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| T |
47136393 |
ctgaaaattccgatcactggtaactcgatctgccaccacgaaaaacggattttgttgtaaca |
47136332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 38716101 - 38716146
Alignment:
| Q |
300 |
attgaaatggggaaagaagttgaggatgttgaagaaggtgagattt |
345 |
Q |
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||||||||||||||||| | ||||||||| ||||| |||||||||| |
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| T |
38716101 |
attgaaatggggaaagagggtgaggatgtggaagatggtgagattt |
38716146 |
T |
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