View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_14 (Length: 413)
Name: NF21527_low_14
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 6663191 - 6662806
Alignment:
| Q |
1 |
ttgtgttattgttggttctgagaatttttcaaattctgaggtgcttggtgttagaggtgttcttgagggtgttactgttgtgagtgtggcggagtaagtg |
100 |
Q |
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| T |
6663191 |
ttgtgttattgttggttctgagaatttttcaaattctgaggtgcttggtgttagaggtgttcttgagggtgttactgttgcgagtgtggcggagtaagtg |
6663092 |
T |
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| Q |
101 |
aaaattgtttatgggnnnnnnngttgaattgctgacatttgagttgcgttgcaaatttgcaactttgaattgacttgtgtttttattgggtgatttttgt |
200 |
Q |
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| T |
6663091 |
agaattgtttatgggtt------tt---ttg-------ttgaattgcgttgcaaatttgcaactttgaattgacttgtgtttttattgggtgatttttgt |
6663008 |
T |
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| Q |
201 |
tcttgtagatcgtttgctgaaacttgtagtaggattcaaggtaccttgcagagcaaagtgttttctggatttgatagttccgaaaaagatgatcttgttc |
300 |
Q |
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| T |
6663007 |
tcttgtagatcgtttgctgaaacttgtagaaggattcaaggtaccttgcagagcaaagtgttttctggatttgatagtgccgaaaaagatgatcttgttc |
6662908 |
T |
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| Q |
301 |
ggttgttgtttaatgctgttgaagtagtttattctgtaagacccctaagagatcattatttgctgcactttttgatttgtcattttggtttatgctgatg |
400 |
Q |
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| T |
6662907 |
ggttgttgtttaacgctgttgaagtagtttattctgtaagacccctaagagatcatcatttgctgcactttttgatgtatcattttggtttctgctgatg |
6662808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 149 - 402
Target Start/End: Complemental strand, 49315056 - 49314803
Alignment:
| Q |
149 |
ttgcaaatttgcaactttgaattgacttgtgtttttattgggtgatttttgttcttgtagatcgtttgctgaaacttgtagtaggattcaaggtaccttg |
248 |
Q |
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| T |
49315056 |
ttgcaaaattgcaactttaaattggcttatgtttttattgattgatttttgttcttgtagatcttttgctgaaacttgtactaggattcaaagtgcgttg |
49314957 |
T |
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| Q |
249 |
cagagcaaagtgttttctggatttgatagttccgaaaaagatgatcttgttcggttgttgtttaatgctgttgaagtagtttattctgtaagacccctaa |
348 |
Q |
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| T |
49314956 |
cagagcaaagtgttctctggaattgctggttctgaaaaggatgatcttgtttgtttgttattcaatgctgttgaagtggtttattctgtaagaccccttt |
49314857 |
T |
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| Q |
349 |
gagatcattatttgctgcactttttgatttgtcattttggtttatgctgatgat |
402 |
Q |
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| T |
49314856 |
gagatccttgtttgttgcactttttgatgtatcattgtgatttctgctgatgat |
49314803 |
T |
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