View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_17 (Length: 398)
Name: NF21527_low_17
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_17 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 6663193 - 6663587
Alignment:
| Q |
16 |
catcatcagcatcaccatcaatctcaccctcctccaattccccttcctcttttnnnnnnnnnnnnnnnnncactacaacaatctccttcgacgacttatt |
115 |
Q |
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| T |
6663193 |
catcatcagcatcaccatcaatctcaccctcctccaactccccttcctctttttcatcatcatcatc---cactacaacaatctccttcgacgacttatt |
6663289 |
T |
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| Q |
116 |
caactcaccatctttgttcccactattgttactattagcattagcatttttatcaagttccataacaaaaatatcattcaaaggcttattctgaacagct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6663290 |
caactcaccatctttgttcccactattgttactattagcattagcatttttatcaagttccataacaaaaatatcattcaaaggcttgttctgaacagct |
6663389 |
T |
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| Q |
216 |
tgtgcccaagcaagattatacaatcccgacgcataacctcgacatatagtcggatacttcgaatacaaatcctgaacagcccaaaccctagaatca---- |
311 |
Q |
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| T |
6663390 |
tgtgcccaagcaagattatacaatcccgacgcataacctcgacatatagtcggatacttcgaatacaaatcctgaacagcccaaaccctagaatcaccac |
6663489 |
T |
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| Q |
312 |
-----------ccaccaccagttttaaccttattatcacttttatccgcctttacatcactattattcaccttaacatcatcaccctttttgaaatct |
398 |
Q |
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| T |
6663490 |
caccaccacctccaccaccagttttaaccttattatcacttttatccgtctttacatcactgttattcaccttaacatcatcaccctttttgaaatct |
6663587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 391
Target Start/End: Complemental strand, 46674823 - 46674791
Alignment:
| Q |
359 |
actattattcaccttaacatcatcacccttttt |
391 |
Q |
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| T |
46674823 |
actattattcaccttaacatcatcacccttttt |
46674791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 49315357 - 49315434
Alignment:
| Q |
164 |
tttatcaagttccataacaaaaatatcattcaaaggcttattctgaacagcttgtgcccaagcaagattatacaatcc |
241 |
Q |
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| T |
49315357 |
tttatcaatttccatagcaaaaatatcattcaaaggcttattctgaacagcctgtgcccaagcaagattatacaatcc |
49315434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 5687401 - 5687437
Alignment:
| Q |
359 |
actattattcaccttaacatcatcaccctttttgaaa |
395 |
Q |
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| T |
5687401 |
actattattcaccttaacatcatcaccctttttgaaa |
5687437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 49315224 - 49315260
Alignment:
| Q |
31 |
catcaatctcaccctcctccaattccccttcctcttt |
67 |
Q |
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| T |
49315224 |
catcaatctcaccctcctccaactccccttcctcttt |
49315260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 31625273 - 31625237
Alignment:
| Q |
359 |
actattattcaccttaacatcatcaccctttttgaaa |
395 |
Q |
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| T |
31625273 |
actattattcaccttaacatcatcaccctttttgaaa |
31625237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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