View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21527_low_19 (Length: 360)
Name: NF21527_low_19
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_19 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 38152690 - 38152352
Alignment:
| Q |
19 |
gaggtgaacaagacaagctatgaaaactgcatcgatacaggattcattaagaacatatcaaggggtggcagacaagacgtttttcagctgactgaagaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38152690 |
gaggtgaacaagacaagctatgaaaactgcatcgatacaggattcattaagaacatatcaaggggtggcagacaagacgtttttcagctgactgaagaca |
38152591 |
T |
|
| Q |
119 |
agatctattacttcataagtggaggaggtggctgttggagtggattgaaggttgcaattgatgttaatgaatatgttgcaccagctcctcagcctactcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38152590 |
agatctattacttcataagtggaggaggtggctgttggagtggattgaaggttgcaattgatgttaatgaatatgttgcaccagctcctcaacctactcc |
38152491 |
T |
|
| Q |
219 |
ccacaaaggtggcacagatgctttaaacattcaaatctaccactcacttgtggtactcatcttaaccttgatttgcaccattctcttggtataaaaattt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38152490 |
ccacaaaggtggcacagatgctttaaacattcaaatctaccactcacttgtggtactcatcttaaccttgatttgcaccattctcttggtat---aattt |
38152394 |
T |
|
| Q |
319 |
cagctcttagaattggcacactatagtatcagatgatatttt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38152393 |
cagctcttagaattggcacactatagtatcagatgatatttt |
38152352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 38222359 - 38222049
Alignment:
| Q |
19 |
gaggtgaacaagacaagctatgaaaactgcatcgatacaggattcattaagaacatatcaaggggtggcagacaagacgtttttcagctgactgaagaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| ||| |||| | || ||| ||||||||| ||| ||| | || |
|
|
| T |
38222359 |
gaggtgaacaagacaagctatgaaaactgcatagatagtggattcatcaagaacataacaacaggtgtcggaagagaagtttttcagttgagtgaggcca |
38222260 |
T |
|
| Q |
119 |
agatctattacttcataagtggaggaggtggctgttggagtggattgaaggttgcaattgatgttaatgaatatgttgcaccagctcctcagcctactcc |
218 |
Q |
| |
|
||| | ||||||||||||| ||||||||| |||| | | ||| ||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38222259 |
agacccattacttcataagcggaggaggtttctgtcagcgcggagtgaaggtcgcaatcgatgttaatgaacatgttgcaccagctcctcagcctactcc |
38222160 |
T |
|
| Q |
219 |
ccacaaaggtggcacagatgctttaaacattcaaatctaccactcacttgtggtactcatcttaaccttgatttgcaccattctcttggtataaaaattt |
318 |
Q |
| |
|
||||||| || ||| ||| ||||||||||||||||||||||||||| || |||||||||| ||| || ||||||| ||||||||||| ||||| |
|
|
| T |
38222159 |
ccacaaaagt---tcagcgacttcaaacattcaaatctaccactcacttgttgtgctcatcttaatcttcatgtgcaccaacttcttggtataataattt |
38222063 |
T |
|
| Q |
319 |
cagctcttagaatt |
332 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
38222062 |
cagctattagaatt |
38222049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 38159018 - 38158731
Alignment:
| Q |
19 |
gaggtgaacaagacaagctatgaaaactgcatcgatacaggattcattaagaacatatcaaggggtggcagacaagacgtttttcagctgactgaagaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||| || || ||| ||||||| ||| ||||| | || |
|
|
| T |
38159018 |
gaggtgaacaagacaagctatgaaaactgcatagatacagggttcatcaagaacataacaaggggcggtggaagagatgtttttctgctaactgaggcca |
38158919 |
T |
|
| Q |
119 |
agatctattacttcataagtggaggaggtggctgttggagtggattgaaggttgcaattgatgttaatgaatatgttgcaccagctcctcagcctactcc |
218 |
Q |
| |
|
||| ||||||||||||||| ||||||||| |||| | | ||| ||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38158918 |
agacctattacttcataagcggaggaggtttctgtcagcgcggagtgaaggtcgcaatcgatgttaatgaacatgttgcaccagctcctcagcctactcc |
38158819 |
T |
|
| Q |
219 |
ccacaaaggtggcacagatgctttaaacattcaaatctaccactcacttgtggtactcatcttaaccttgatttgcaccattctcttggtataa |
312 |
Q |
| |
|
|||||||||| || |||||| ||||||| |||| ||||| ||| |||| |||||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
38158818 |
ccacaaaggt---tcaaatgcttcaaacatttaaatttaccattcatctgtg---ctcatcttaatcttgatgtgcaccaacctcttggtataa |
38158731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 38228724 - 38228434
Alignment:
| Q |
19 |
gaggtgaacaagacaagctatgaaaactgcatcgatacaggattcattaagaacatatcaaggggtggcagacaagacgtttttcagctgactgaagaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| ||| |||| | || ||| ||||||||| ||| ||| | || |
|
|
| T |
38228724 |
gaggtgaacaagacaagctatgaaaactgcatagatagtggattcatcaagaacataacaacaggtgtcggaagagaagtttttcagttgagtgaggcca |
38228625 |
T |
|
| Q |
119 |
agatctattacttcataagtggaggaggtggctgttggagtggattgaaggttgcaattgatgttaatgaatatgttgcaccagctcctcagcctactcc |
218 |
Q |
| |
|
||| | ||||||||||||| ||||||||| |||| | | ||| ||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38228624 |
agacccattacttcataagcggaggaggtttctgtcagcgcggagtgaaggtcgcaatcgatgttaatgaacatgttgcaccagctcctcagcctactcc |
38228525 |
T |
|
| Q |
219 |
ccacaaaggtggcacagatgctttaaacattcaaatctaccactcacttgtggtactcatcttaaccttgatttgcaccattctcttggtataa |
312 |
Q |
| |
|
||||||| || ||| ||| |||||||||||||||||||||||||| || |||||||||| ||| || ||||||| ||||||||||| |
|
|
| T |
38228524 |
ccacaaaagt---tcagcgacttcaaacattcaaatctaccactcacttgctgtgctcatcttaatcttcatgtgcaccaacttcttggtataa |
38228434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University