View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_2 (Length: 558)
Name: NF21527_low_2
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 18 - 552
Target Start/End: Original strand, 48594171 - 48594705
Alignment:
| Q |
18 |
aaatagtgtaaaaagtcaaattgagcagaaatctggcctcattctcttccgaactgatatagaacctctttgatgatccctaaagattttgatctctgaa |
117 |
Q |
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| T |
48594171 |
aaatagtgtaaaaagtcaaattgagcagaaatctggcctcattctcttccgaactgatatagaacctctttgatgatccctaaagattttgatctctgaa |
48594270 |
T |
|
| Q |
118 |
gaatccctcatatcctcaagactaatatactgttgcttaaccatctttaaggaattatgacacccagtgtcatgaatccaaatataaggatgactagttt |
217 |
Q |
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| T |
48594271 |
gaatccctcatatcctcaagactaatatactgttgcttaaccatctttaaggaattatgacacccagtgtcatgaatccaaatataaggatgactagttt |
48594370 |
T |
|
| Q |
218 |
catcataggaatacaacaagttcttcaaattttcaccaacactgccattcctaggcatatacgccttatatatgtttttacatttgagtctctttgaaga |
317 |
Q |
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| T |
48594371 |
catcataggaatacaacaagttcttcaaattttcaccaacactgccattcctaggcatatatgccttatatatgtttttacatttgagtctctttgaaga |
48594470 |
T |
|
| Q |
318 |
ccctggcttcaatgtatgaatctttttcagtattgatcccacccttatttgcagctccactggcttatcactcaggttccatatcctcgtcccgaatccc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48594471 |
ccctggcttcaatgtatgaatctttttcagtattgatcccacccttatttgcagctccactggcttatcactcaggttccatatcctcgtcccgaatccc |
48594570 |
T |
|
| Q |
418 |
gagccttgtgcttggtcgcgacagccgtcaaagcaaccaccaagagatggaaggctaaaaccttgcacttttcccatgagagacttcatgtgtttcttat |
517 |
Q |
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| T |
48594571 |
gagccttgtgcttggtcgcgacagccgtcaaagcaaccaccaagagatggaaggctaaaaccttgcacttttcccatgagagacttcatgtgtttcttat |
48594670 |
T |
|
| Q |
518 |
tcttgctcattgcatatgcaatatgtttctgtgct |
552 |
Q |
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| T |
48594671 |
tcttgctcattgcatatgcaatatgtttctgtgct |
48594705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 33 - 502
Target Start/End: Complemental strand, 7625135 - 7624666
Alignment:
| Q |
33 |
tcaaattgagcagaaatctggcctcattctcttccgaactgatatagaacctctttgatgatccctaaagattttgatctctgaagaatccctcatatcc |
132 |
Q |
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||||||| |||| ||||| ||||| ||||||| | ||| || || ||||||| || |||||||| ||||| | ||||| ||||| | ||| ||| |
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| T |
7625135 |
tcaaattcagcataaatcaggcctagttctcttacaaacagaaatgcaacctctgtggtgatcccttaagatcctaatctcagaagacatcttcaaatct |
7625036 |
T |
|
| Q |
133 |
tcaagactaatatactgttgcttaaccatctttaaggaattatgacacccagtgtcatgaatccaaatataaggatgactagtttcatcataggaataca |
232 |
Q |
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||||| ||||||||||||||||| |||||| ||||||||| | | | | | ||||||||||| |||||||| |||| ||| ||||||||| |||||| |
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| T |
7625035 |
tcaaggctaatatactgttgctttaccatccttaaggaatca---ccctctatatcatgaatccatatataagggtgacaagtctcatcatagtaataca |
7624939 |
T |
|
| Q |
233 |
acaagttcttcaaattttcaccaacactgcca-ttc--ctaggcatatacgccttatatatgtttttacatttgagtctctttgaagaccctggcttcaa |
329 |
Q |
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|||| |||||| || | |||| ||| ||| ||||||||||| | |||||||||| ||||| ||| | |||||||||||||||||||||||| |
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| T |
7624938 |
acaaactcttcattccaacattatcacttccacttctactaggcatatatgtcttatatatgcgtttacttttcactctctttgaagaccctggcttcaa |
7624839 |
T |
|
| Q |
330 |
tgtatgaatctttttcagtattgatcccacccttatttgcagctccactggcttatcactcaggttccatatcctcgtcccgaatcccgagccttgtgct |
429 |
Q |
| |
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|||||| ||| |||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||| ||||| ||||| || |||| | |
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| T |
7624838 |
aatatgaaccttcttcagtattgatcctacccttatttgtagctccactggcctatcactcaggttccaaatccttgtccctaatccataggcttgagtc |
7624739 |
T |
|
| Q |
430 |
tggtcgcgacagccgtcaaagcaaccaccaagagatggaaggctaaaaccttgcacttttcccatgagagact |
502 |
Q |
| |
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|| || ||| ||||||||||| ||||||||| ||||||| |||||| || ||| ||||||||||||| |
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| T |
7624738 |
tgatcatagcaggtatcaaagcaacctccaagagattgaaggctcaaacctctcattttccccatgagagact |
7624666 |
T |
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