View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_20 (Length: 349)
Name: NF21527_low_20
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 1833337 - 1833022
Alignment:
| Q |
10 |
gcagagacacaagtagatgacacataagatcttaacagattttggactaaattaacattaattcctatattgatgaaaaaatgagagccaaagaaattgt |
109 |
Q |
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| T |
1833337 |
gcagagacacaagtagatgacacata---tcttaacagattttggactaaattaacattaactcctatattgatgaaaaaatgagagccaaagaaattgt |
1833241 |
T |
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| Q |
110 |
gaaatcaagaactttcacgttaattaataccatcatgatcatctagtaatctcaaaagaagtagattttacaaatttaaaatggtactcgttacttcaaa |
209 |
Q |
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| T |
1833240 |
gaaatcaagaactttcacgttaattaataccatcatgatcatctagtaatctcaaaagaagtagattttacaaatttaaaatggtactcgttacttcaaa |
1833141 |
T |
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| Q |
210 |
gttcataaaaagagattgtaagttcttgataacccaatcagaaagcaaacaccaaatgtataaaacataatagttaatagtggagtgcggtgccagtggc |
309 |
Q |
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| T |
1833140 |
gttcataaaaagacattgtaagttcttgataacccaatcagaaagcaaacaccaaatgtataaaacataatagttaatagtggagtgtggtgccagtg-- |
1833043 |
T |
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| Q |
310 |
cagacaccttgaaagcatgtat |
331 |
Q |
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| T |
1833042 |
-agacaccttgaaagcatgtat |
1833022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 169 - 331
Target Start/End: Complemental strand, 946975 - 946809
Alignment:
| Q |
169 |
agtagattttacaaatttaaaatggtactcgttacttcaaagttcataaaaagagattgtaagttcttgataacccaatcagaaagcaaacaccaaa--- |
265 |
Q |
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| T |
946975 |
agtagattttacaaatttaatatcgtactcgttacttcaaagatcagaataaggcattgtaagttttcgatgacccaatcagaaaccaaacaccaaagat |
946876 |
T |
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| Q |
266 |
-tgtataaaacataatagttaatagtggagtgcggtgccagtggccagacaccttgaaagcatgtat |
331 |
Q |
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| T |
946875 |
ttatataaaacataatagttaatagcggagtgcagtgccagtggccagacaccttgaaagcaggtat |
946809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 947228 - 947107
Alignment:
| Q |
11 |
cagagacacaagtagatgacacataagatcttaacagattttggactaaattaacattaattcctatattgatgaaaaaatgagagccaaagaaattgtg |
110 |
Q |
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|||||||||||||| ||||||||||||| || |||||||||| |||||||||||||||| |||||||||||||||| | | |||||||||||||| || |
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| T |
947228 |
cagagacacaagtaaatgacacataagagctaaacagattttagactaaattaacattagctcctatattgatgaaacca-gggagccaaagaaattatg |
947130 |
T |
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| Q |
111 |
aaatcaagaactttcacgttaat |
133 |
Q |
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| T |
947129 |
aaatcaagaactttcacgttaat |
947107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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