View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21527_low_22 (Length: 330)

Name: NF21527_low_22
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21527_low_22
NF21527_low_22
[»] chr4 (17 HSPs)
chr4 (18-221)||(38478721-38478923)
chr4 (244-312)||(38478535-38478603)
chr4 (79-126)||(45104312-45104359)
chr4 (79-121)||(54426155-54426197)
chr4 (79-122)||(26781-26824)
chr4 (82-125)||(29126182-29126225)
chr4 (79-121)||(21731572-21731614)
chr4 (81-121)||(35571549-35571589)
chr4 (79-121)||(18815135-18815177)
chr4 (79-121)||(25571371-25571413)
chr4 (83-125)||(32831438-32831480)
chr4 (84-125)||(1075566-1075607)
chr4 (79-120)||(46714907-46714948)
chr4 (79-120)||(55414329-55414370)
chr4 (80-121)||(55437188-55437229)
chr4 (79-119)||(23319965-23320005)
chr4 (81-121)||(27043748-27043788)
[»] chr5 (19 HSPs)
chr5 (84-125)||(10771809-10771850)
chr5 (79-121)||(7705914-7705956)
chr5 (80-121)||(16937800-16937841)
chr5 (79-127)||(6938649-6938697)
chr5 (81-125)||(14331474-14331518)
chr5 (81-125)||(42646998-42647042)
chr5 (78-125)||(17368780-17368827)
chr5 (82-125)||(36318882-36318925)
chr5 (84-126)||(14980616-14980658)
chr5 (79-125)||(41535020-41535066)
chr5 (79-125)||(42034168-42034214)
chr5 (78-123)||(11707153-11707198)
chr5 (80-125)||(25720334-25720379)
chr5 (80-125)||(26004914-26004959)
chr5 (83-120)||(37954800-37954837)
chr5 (79-120)||(42100424-42100465)
chr5 (81-125)||(11153364-11153408)
chr5 (79-119)||(12433089-12433129)
chr5 (85-121)||(22209746-22209782)
[»] chr2 (26 HSPs)
chr2 (79-123)||(15370239-15370283)
chr2 (82-125)||(787440-787483)
chr2 (81-127)||(33942012-33942058)
chr2 (79-124)||(750251-750296)
chr2 (79-124)||(29936137-29936182)
chr2 (78-123)||(33503108-33503153)
chr2 (84-121)||(40158830-40158867)
chr2 (81-125)||(30990357-30990401)
chr2 (82-125)||(4350798-4350841)
chr2 (82-125)||(43259943-43259986)
chr2 (79-121)||(7928214-7928256)
chr2 (79-121)||(15305786-15305828)
chr2 (78-120)||(40400815-40400857)
chr2 (79-125)||(40759268-40759314)
chr2 (82-120)||(40837356-40837394)
chr2 (79-121)||(45229623-45229665)
chr2 (79-112)||(4607046-4607079)
chr2 (79-124)||(28803446-28803491)
chr2 (84-121)||(33319737-33319774)
chr2 (80-125)||(38767499-38767544)
chr2 (80-121)||(42659128-42659169)
chr2 (81-125)||(750842-750886)
chr2 (82-114)||(3312196-3312228)
chr2 (80-120)||(26143559-26143599)
chr2 (78-122)||(42420137-42420181)
chr2 (79-119)||(42868397-42868437)
[»] chr7 (14 HSPs)
chr7 (82-125)||(1418527-1418570)
chr7 (82-122)||(11619077-11619117)
chr7 (82-122)||(17248834-17248874)
chr7 (85-124)||(425745-425784)
chr7 (78-125)||(3610655-3610702)
chr7 (89-128)||(22759266-22759305)
chr7 (79-121)||(5947353-5947395)
chr7 (83-125)||(7513667-7513709)
chr7 (85-123)||(32410650-32410688)
chr7 (79-121)||(40252039-40252081)
chr7 (84-125)||(3836604-3836645)
chr7 (85-125)||(529470-529510)
chr7 (81-125)||(29363616-29363660)
chr7 (83-127)||(32791665-32791709)
[»] chr6 (13 HSPs)
chr6 (82-121)||(4163265-4163304)
chr6 (82-121)||(4224886-4224925)
chr6 (82-127)||(4308883-4308928)
chr6 (81-125)||(33068520-33068564)
chr6 (82-125)||(33080497-33080540)
chr6 (79-125)||(2457049-2457095)
chr6 (81-119)||(9202903-9202941)
chr6 (79-125)||(12111075-12111121)
chr6 (79-121)||(35069528-35069570)
chr6 (79-117)||(35070570-35070608)
chr6 (81-122)||(31624371-31624412)
chr6 (81-121)||(835179-835219)
chr6 (81-125)||(10016731-10016775)
[»] chr3 (12 HSPs)
chr3 (78-117)||(47132432-47132471)
chr3 (81-121)||(43062785-43062825)
chr3 (78-121)||(20170629-20170672)
chr3 (82-121)||(20880588-20880627)
chr3 (82-124)||(1288768-1288810)
chr3 (79-125)||(22667511-22667557)
chr3 (79-125)||(22724150-22724196)
chr3 (83-121)||(24085258-24085296)
chr3 (79-125)||(44014714-44014760)
chr3 (79-120)||(1820048-1820089)
chr3 (88-125)||(27795938-27795975)
chr3 (81-121)||(39980841-39980881)
[»] chr8 (18 HSPs)
chr8 (79-121)||(30251370-30251412)
chr8 (81-121)||(36963272-36963312)
chr8 (90-125)||(3953910-3953945)
chr8 (79-122)||(6526168-6526211)
chr8 (78-125)||(7008706-7008753)
chr8 (82-121)||(9130238-9130277)
chr8 (78-125)||(43043776-43043823)
chr8 (78-121)||(43045640-43045683)
chr8 (78-125)||(44236738-44236785)
chr8 (79-125)||(16162868-16162914)
chr8 (79-121)||(38602439-38602481)
chr8 (82-120)||(44792769-44792807)
chr8 (80-121)||(15180651-15180692)
chr8 (79-120)||(35643904-35643945)
chr8 (85-125)||(3254324-3254364)
chr8 (81-113)||(10062059-10062091)
chr8 (81-125)||(32976481-32976525)
chr8 (81-125)||(35928648-35928692)
[»] chr1 (23 HSPs)
chr1 (79-121)||(473275-473317)
chr1 (79-121)||(2295208-2295250)
chr1 (79-121)||(14385709-14385751)
chr1 (79-116)||(14576570-14576607)
chr1 (84-125)||(18327067-18327108)
chr1 (84-121)||(22416832-22416869)
chr1 (73-113)||(15942657-15942697)
chr1 (79-114)||(2295310-2295345)
chr1 (84-123)||(4549462-4549501)
chr1 (82-125)||(6292600-6292643)
chr1 (82-121)||(21002267-21002306)
chr1 (82-121)||(41505786-41505825)
chr1 (79-121)||(15477665-15477707)
chr1 (79-121)||(37473519-37473561)
chr1 (79-121)||(38247439-38247481)
chr1 (79-121)||(43230688-43230730)
chr1 (88-125)||(28837278-28837315)
chr1 (82-123)||(41638227-41638268)
chr1 (85-125)||(2832080-2832120)
chr1 (81-125)||(26461859-26461903)
chr1 (80-128)||(30815571-30815619)
chr1 (81-125)||(32958745-32958789)
chr1 (81-121)||(34952314-34952354)
[»] scaffold0020 (1 HSPs)
scaffold0020 (79-113)||(159889-159923)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 38478923 - 38478721
Alignment:
Q  18 caccaacttcacagtaaacagcaattagcacagaaaataaaaattcccaaagctaccgatagcctgtttggattggcttatttgagcatatctactggca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||    
T  38478923 caccaacttcacagtaaacagcaattagcacagaaaataaaaattcccaaagcta----tagcctgtttggattggcttatttgagcatatctactggca 38478828  T
Q  118 taagcactagctagcaacactgtttggaagaactaattcataagctgcgttcagat---ttttcctataagctctccaggataataggtttaacaaaagc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  38478827 taagcactagctagcaacactgtttggaagaactaattcataagctgcgttcagattttttttcctataagctctccaggataataggtttaacaaaagc 38478728  T
Q  215 agtttga 221  Q
    |||||||    
T  38478727 agtttga 38478721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 244 - 312
Target Start/End: Complemental strand, 38478603 - 38478535
Alignment:
Q  244 catttgatcatacagacaagttcaagagaaaccctaggaatcaaaactcaattattataacgccaattt 312  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38478603 catttgatcatacagacaagttcaagagaaaccctaggaattaaaactcaattattataacgccaattt 38478535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 45104312 - 45104359
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcacta 126  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  45104312 gcctgtttggattagcttatttgagcatatctattggcataagcacta 45104359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 54426197 - 54426155
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  54426197 gcctgtttggattggcttatttgagcttatctactggcataag 54426155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 26781 - 26824
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagc 122  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  26781 gcctgtttggattggcttatttgagcttatcaactggcataagc 26824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 29126182 - 29126225
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||    
T  29126182 tgtttggattggcttatttgagcttatctaccggcataagcact 29126225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 21731572 - 21731614
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||| |||||||||||||||||||| ||||||    
T  21731572 gcctgtttggattggtttatttgagcatatctactgacataag 21731614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 35571549 - 35571589
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  35571549 ctgtttggattggcttatttgagcttatctactagcataag 35571589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 18815177 - 18815135
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||||||| || ||||| |||||||    
T  18815177 gcctgtttggattggcttatttgagcttacctactagcataag 18815135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 25571413 - 25571371
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||||||  ||||||||| ||||||    
T  25571413 gcctgtttggattggcttatttgagtttatctactgacataag 25571371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 32831438 - 32831480
Alignment:
Q  83 gtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||    
T  32831438 gtttggattggctcatttgagcttatctactgacataagcact 32831480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 1075607 - 1075566
Alignment:
Q  84 tttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||| |||||||||||||||| ||||||||||||||| ||||    
T  1075607 tttgaattggcttatttgagcttatctactggcataaacact 1075566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 46714907 - 46714948
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataa 120  Q
    ||||||||| |||||||||||||| | |||||||||||||||    
T  46714907 gcctgtttgaattggcttatttgaacttatctactggcataa 46714948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 55414329 - 55414370
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataa 120  Q
    |||||||||||||| ||||||||||  |||||||||||||||    
T  55414329 gcctgtttggattgacttatttgagagtatctactggcataa 55414370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 55437229 - 55437188
Alignment:
Q  80 cctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  55437229 cctgtttggattggcttatttgagtttatctactgccataag 55437188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 23320005 - 23319965
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcata 119  Q
    |||||||||||||||||||||||||  |||||||| |||||    
T  23320005 gcctgtttggattggcttatttgagattatctactagcata 23319965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 27043748 - 27043788
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||| ||||||||||| ||||||||| ||||||    
T  27043748 ctgtttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 10771809 - 10771850
Alignment:
Q  84 tttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  10771809 tttggattggcttatttgagcttatctactggcataagcact 10771850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 7705914 - 7705956
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  7705914 gcctgtttggattgacttatttgagcatatctactagcataag 7705956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 16937800 - 16937841
Alignment:
Q  80 cctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  16937800 cctgtttggattggcttatttgagcttatctactagcataag 16937841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 6938649 - 6938697
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcactag 127  Q
    ||||||||||||| | |||||||||| |||||||| |||||||||||||    
T  6938649 gcctgtttggattaggttatttgagcttatctactagcataagcactag 6938697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 14331518 - 14331474
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||    
T  14331518 ctgtttggattgacttatttgagcttatctactgtcataagcact 14331474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 42647042 - 42646998
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||||    
T  42647042 ctgtttggattggcttatttgagcttatctactgacattagcact 42646998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 17368827 - 17368780
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||||| ||||||| | | ||||||||||||||||||||    
T  17368827 agcctgtttggattgacttatttaaacttatctactggcataagcact 17368780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 36318925 - 36318882
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||    
T  36318925 tgtttggattgtcttattttagcttatctactggcataagcact 36318882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 14980658 - 14980616
Alignment:
Q  84 tttggattggcttatttgagcatatctactggcataagcacta 126  Q
    |||||| || ||||||||||| |||||||||||||||||||||    
T  14980658 tttggaatgacttatttgagcttatctactggcataagcacta 14980616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 41535020 - 41535066
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||| ||||||||||||||||  |||||||| ||||||||||    
T  41535020 gcctgtttgaattggcttatttgagctcatctactgccataagcact 41535066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 42034214 - 42034168
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||| |||||||||||| || |||||| ||||||||||    
T  42034214 gcctgtttggattagcttatttgagcttacctactgacataagcact 42034168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 11707198 - 11707153
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataagca 123  Q
    ||||||||||||||| ||||||||||| ||| |||||||| |||||    
T  11707198 agcctgtttggattgacttatttgagcttatttactggcagaagca 11707153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 25720334 - 25720379
Alignment:
Q  80 cctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||| ||| |||||||||||  ||||||||||||||||||||    
T  25720334 cctgtttgaattagcttatttgaggttatctactggcataagcact 25720379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 26004914 - 26004959
Alignment:
Q  80 cctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||| ||||||| ||| |||||||| |||||||||||    
T  26004914 cctgtttggattgacttattttagcttatctactagcataagcact 26004959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 37954837 - 37954800
Alignment:
Q  83 gtttggattggcttatttgagcatatctactggcataa 120  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  37954837 gtttggattggcttatttgagcttatctacaggcataa 37954800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 42100465 - 42100424
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataa 120  Q
    |||||||||||| ||||||||||||| |||||| ||||||||    
T  42100465 gcctgtttggatgggcttatttgagcttatctattggcataa 42100424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 11153364 - 11153408
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||||||| ||||||| |||||||| |||||| ||||    
T  11153364 ctgtttggattggcttgtttgagcttatctactagcataaacact 11153408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 12433089 - 12433129
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcata 119  Q
    |||||||||||||||||||||||| | ||| ||||||||||    
T  12433089 gcctgtttggattggcttatttgaacttatttactggcata 12433129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 22209746 - 22209782
Alignment:
Q  85 ttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  22209746 ttggattgacttatttgagcttatctactggcataag 22209782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 15370239 - 15370283
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagca 123  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  15370239 gcctgtttggattgacttatttgagcttatctactggcataagca 15370283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 787483 - 787440
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||| ||||| |||||||||||||||||||||||||    
T  787483 tgtttggattggattattcgagcatatctactggcataagcact 787440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 33942058 - 33942012
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcactag 127  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  33942058 ctgtttggattggcttatttgaggttatctactggcataagtactag 33942012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 750296 - 750251
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcac 124  Q
    |||| ||||||||| |||||||||| ||||||||||||||||||||    
T  750296 gcctatttggattgtcttatttgagtatatctactggcataagcac 750251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 29936182 - 29936137
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcac 124  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||    
T  29936182 gcctgtttggattggcttatttgagctcatcttctggcataagcac 29936137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 33503153 - 33503108
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataagca 123  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||    
T  33503153 agcctgtttgtattggcttatttgagcttatctactagcataagca 33503108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 40158867 - 40158830
Alignment:
Q  84 tttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  40158867 tttggattggcttatttgagcatatctactgacataag 40158830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 30990357 - 30990401
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  30990357 ctgtttggattggcttatttgagcttatctactaacataagcact 30990401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 4350841 - 4350798
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||||||||||||| | ||||||| ||||||||||    
T  4350841 tgtttggattggcttatttgagcttctctactgacataagcact 4350798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 43259986 - 43259943
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||||||||||| | |||||||| |||||||||||    
T  43259986 tgtttggattggcttatttgaacttatctactagcataagcact 43259943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 7928214 - 7928256
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||||||| |||||| || ||||||    
T  7928214 gcctgtttggattggcttatttgagcttatctattgacataag 7928256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 15305828 - 15305786
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||||||| |||||| || ||||||    
T  15305828 gcctgtttggattggcttatttgagcttatctattgacataag 15305786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 40400815 - 40400857
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataa 120  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||    
T  40400815 agcctgtttggattggcttatttaagcctatctactgacataa 40400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 40759314 - 40759268
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||||| ||||||||||| |||||| || ||||||||||    
T  40759314 gcctgtttggattgccttatttgagcttatctattgacataagcact 40759268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 40837356 - 40837394
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataa 120  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  40837356 tgtttggattggcttatttgagcttatctactgacataa 40837394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 45229665 - 45229623
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||| | |||||||| ||||||||||||||||    
T  45229665 gcctgtttggattggttgatttgagcttatctactggcataag 45229623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 4607079 - 4607046
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctac 112  Q
    |||||||||||||||||||||||||| |||||||    
T  4607079 gcctgtttggattggcttatttgagcttatctac 4607046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 28803446 - 28803491
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcac 124  Q
    |||| ||||||||| ||||||||||| ||||||| |||||||||||    
T  28803446 gcctatttggattgacttatttgagcttatctaccggcataagcac 28803491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 33319737 - 33319774
Alignment:
Q  84 tttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  33319737 tttggattggcttatttgagcttgtctactggcataag 33319774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 38767499 - 38767544
Alignment:
Q  80 cctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||| |||||||||||  |||| ||||||||||||||||||||    
T  38767499 cctgtttagattggcttatacgagcttatctactggcataagcact 38767544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 42659128 - 42659169
Alignment:
Q  80 cctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||    
T  42659128 cctgtttgggttggcttatttgagcttatttactggcataag 42659169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 750886 - 750842
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||| ||||||||||| |||||| ||| |||||||||    
T  750886 ctgtttggattgacttatttgagcttatctattggtataagcact 750842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 3312228 - 3312196
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactg 114  Q
    ||||||||||||||||||||||| |||||||||    
T  3312228 tgtttggattggcttatttgagcttatctactg 3312196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 26143559 - 26143599
Alignment:
Q  80 cctgtttggattggcttatttgagcatatctactggcataa 120  Q
    ||||||||||||||||| ||||||| ||||||||| |||||    
T  26143559 cctgtttggattggcttgtttgagcttatctactgacataa 26143599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 42420137 - 42420181
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataagc 122  Q
    ||||||||||||||| |||| ||||||||||| ||| ||||||||    
T  42420137 agcctgtttggattgacttacttgagcatatccactagcataagc 42420181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 42868397 - 42868437
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcata 119  Q
    |||||||||||||| ||||||||||| |||||| |||||||    
T  42868397 gcctgtttggattgccttatttgagcttatctattggcata 42868437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 1418570 - 1418527
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataagcact 1418527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 11619077 - 11619117
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagc 122  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  11619077 tgtttggattggcttatttgagcttatctactgacataagc 11619117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 17248874 - 17248834
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagc 122  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  17248874 tgtttggattggcttatttgagcatatctaccagcataagc 17248834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 425745 - 425784
Alignment:
Q  85 ttggattggcttatttgagcatatctactggcataagcac 124  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  425745 ttggattggcttatttgagattatctactggcataagcac 425784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 3610655 - 3610702
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||| |||||||||||||||| ||||||||||| ||| ||||    
T  3610655 agcctgtttgaattggcttatttgagcttatctactggcctaaccact 3610702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 22759305 - 22759266
Alignment:
Q  89 attggcttatttgagcatatctactggcataagcactagc 128  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  22759305 attgacttatttgagcttatctactggcataagcactagc 22759266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 5947395 - 5947353
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||||||| |||||| ||| |||||    
T  5947395 gcctgtttggattggcttatttgagcttatctattggtataag 5947353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 7513709 - 7513667
Alignment:
Q  83 gtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||    
T  7513709 gtttgaattgacttatttgagcttatctactggcataagcact 7513667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 32410688 - 32410650
Alignment:
Q  85 ttggattggcttatttgagcatatctactggcataagca 123  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  32410688 ttggattggcttatttgagcttatctattggcataagca 32410650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 40252039 - 40252081
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||| |||||||||||||||| |||||||| |||||||    
T  40252039 gcctgtttgaattggcttatttgagcttatctactagcataag 40252081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 3836604 - 3836645
Alignment:
Q  84 tttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||    
T  3836604 tttggattgccttatttgagcttatctactggcttaagcact 3836645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 529510 - 529470
Alignment:
Q  85 ttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||| ||||||||||| ||||||||||||||| ||||    
T  529510 ttggattgacttatttgagcttatctactggcataaacact 529470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 29363660 - 29363616
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||||||||||||| | ||||||||  ||||||||||    
T  29363660 ctgtttggattggcttatttgaacttatctactaacataagcact 29363616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 32791665 - 32791709
Alignment:
Q  83 gtttggattggcttatttgagcatatctactggcataagcactag 127  Q
    ||||||||||||||||  |||| |||||||| |||||||||||||    
T  32791665 gtttggattggcttatcagagcttatctactagcataagcactag 32791709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 4163304 - 4163265
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  4163304 tgtttggattggcttatttgagcttatctactggcataag 4163265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 4224925 - 4224886
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  4224925 tgtttggattggcttatttgagcttatctactggcataag 4224886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 4308928 - 4308883
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagcactag 127  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataagcactag 4308883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 33068520 - 33068564
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||||||||||||| | ||||||||| ||||||||||    
T  33068520 ctgtttggattggcttatttgaacttatctactgacataagcact 33068564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 33080497 - 33080540
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||||    
T  33080497 tgtttggataggcttatttgagcttatttactggcataagcact 33080540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 2457095 - 2457049
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||||||||||||||||  ||||||| | ||||||||||    
T  2457095 gcctgtttggattggcttatttgagattatctaccgacataagcact 2457049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 9202903 - 9202941
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcata 119  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  9202903 ctgtttggattgacttatttgagcttatctactggcata 9202941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 12111121 - 12111075
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||| ||||||||| ||||||||||| |||||||| |||||||||||    
T  12111121 gcctatttggattgacttatttgagcttatctactagcataagcact 12111075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 35069528 - 35069570
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  35069528 gcctgtttgtattggcttatttgagcttatctactgacataag 35069570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 35070570 - 35070608
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggca 117  Q
    |||||||||||||||||||||||||| || |||||||||    
T  35070570 gcctgtttggattggcttatttgagcttacctactggca 35070608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 31624412 - 31624371
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagc 122  Q
    |||||||||||||||||||||||| ||| ||||| |||||||    
T  31624412 ctgtttggattggcttatttgagcttatatactgacataagc 31624371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 835179 - 835219
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  835179 ctgtttggattgccttatttgagcttatctactagcataag 835219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 10016775 - 10016731
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||| |||||||||| ||||||| ||||||| ||||    
T  10016775 ctgtttggattggtttatttgagcttatctacaggcataaacact 10016731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 47132471 - 47132432
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggca 117  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  47132471 agcctgtttggattggcttatttgagcttatctactggca 47132432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 43062825 - 43062785
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  43062825 ctgtttggattggcttatttgagcatatcaactggcttaag 43062785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 20170629 - 20170672
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||||||| |||||| || ||||||    
T  20170629 agcctgtttggattggcttatttgagcttatctagtgacataag 20170672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 20880627 - 20880588
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  20880627 tgtttggattggcttatttgagcttatctacttgcataag 20880588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 1288768 - 1288810
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagcac 124  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||    
T  1288768 tgtttggattgacttatttgagcttatcaactggcataagcac 1288810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 22667557 - 22667511
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||| ||| ||||||||||||||||| ||||||||| ||||||||||    
T  22667557 gcctatttcgattggcttatttgagcttatctactgacataagcact 22667511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 22724196 - 22724150
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||| ||| ||||||||||||||||| ||||||||| ||||||||||    
T  22724196 gcctatttcgattggcttatttgagcttatctactgacataagcact 22724150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Original strand, 24085258 - 24085296
Alignment:
Q  83 gtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  24085258 gtttggattggcttatttgagcttatctaccggcataag 24085296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 44014714 - 44014760
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||||||||||||||||  |||||||| |||||| ||||    
T  44014714 gcctgtttggattggcttatttgagtttatctactagcataaacact 44014760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 1820048 - 1820089
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataa 120  Q
    |||||||||||||||||||||||||| |||||  ||||||||    
T  1820048 gcctgtttggattggcttatttgagcttatcttatggcataa 1820089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 27795938 - 27795975
Alignment:
Q  88 gattggcttatttgagcatatctactggcataagcact 125  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  27795938 gattagcttatttgagcttatctactggcataagcact 27795975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 39980881 - 39980841
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||| ||||||| |||||||| |||||||    
T  39980881 ctgtttggattggcttgtttgagcttatctactagcataag 39980841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 30251370 - 30251412
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||||||| ||||||||| ||||||    
T  30251370 gcctgtttggattggcttatttgagcttatctactgacataag 30251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 36963272 - 36963312
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  36963272 ctgtttggattggcttatttgagctaatctactggcataag 36963312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 3953945 - 3953910
Alignment:
Q  90 ttggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||||| ||||||||||||||||||||    
T  3953945 ttggcttatttgagcctatctactggcataagcact 3953910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 6526168 - 6526211
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagc 122  Q
    |||||||||||||| |||||| |||| |||||||||||||||||    
T  6526168 gcctgtttggattgacttattcgagcctatctactggcataagc 6526211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 7008753 - 7008706
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||| |||| ||||||||||  ||||||||||||||||||||    
T  7008753 agcctgtttgaattgacttatttgagtttatctactggcataagcact 7008706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 9130238 - 9130277
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  9130238 tgtttggattagcttatttgagcttatctactggcataag 9130277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 43043823 - 43043776
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||||| ||| ||||||| |||| |||||||||||||||    
T  43043823 agcctgtttggattgacttgtttgagcttatcaactggcataagcact 43043776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 43045640 - 43045683
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||    
T  43045640 agcctgtttggattggcttatttaagcttatctactagcataag 43045683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 44236738 - 44236785
Alignment:
Q  78 agcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||||  ||||||||||  ||||||||||||||||||||    
T  44236738 agcctgtttggattaccttatttgagtttatctactggcataagcact 44236785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 16162914 - 16162868
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||||||||||||||||  |||||||| |||||| ||||    
T  16162914 gcctgtttggattggcttatttgagtttatctactagcataaacact 16162868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 38602481 - 38602439
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||    
T  38602481 gcctgtttggattgacttatttgagcttatctactgacataag 38602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 44792807 - 44792769
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataa 120  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  44792807 tgtttggattggcttatttgagcttatctactgggataa 44792769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 15180692 - 15180651
Alignment:
Q  80 cctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  15180692 cctgtttggattggcttatttgagtttatctactgccataag 15180651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 35643904 - 35643945
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataa 120  Q
    ||||||| ||||||||||||||| || |||||||||||||||    
T  35643904 gcctgttgggattggcttatttgggcttatctactggcataa 35643945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 3254364 - 3254324
Alignment:
Q  85 ttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||| ||| |||||| ||||||||||||||||||||    
T  3254364 ttggattggtttacttgagcttatctactggcataagcact 3254324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 10062059 - 10062091
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctact 113  Q
    |||||||||||||||||||||||| ||||||||    
T  10062059 ctgtttggattggcttatttgagcttatctact 10062091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 32976525 - 32976481
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||  ||||||||||| ||||||||| ||||||||||    
T  32976525 ctgtttggattcccttatttgagcttatctactgacataagcact 32976481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 35928648 - 35928692
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||||||||| ||||||| ||| ||||||||| ||||||||||    
T  35928648 ctgtttggattgtcttattttagcttatctactgacataagcact 35928692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 473317 - 473275
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||| ||||||||||||||||| ||||||||||||||||    
T  473317 gcctgtttagattggcttatttgagcctatctactggcataag 473275  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 2295250 - 2295208
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  2295250 gcctgtttgaattggcttatttgagcttatctactggcataag 2295208  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 14385709 - 14385751
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||| |||||||||||||||||| ||||||||||||||||    
T  14385709 gcctgttcggattggcttatttgagcttatctactggcataag 14385751  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 14576570 - 14576607
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggc 116  Q
    |||||||||||||||||||||||||| |||||||||||    
T  14576570 gcctgtttggattggcttatttgagcttatctactggc 14576607  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 18327067 - 18327108
Alignment:
Q  84 tttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  18327067 tttggattggcttatttgagcttatctactgtcataagcact 18327108  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 121
Target Start/End: Original strand, 22416832 - 22416869
Alignment:
Q  84 tttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  22416832 tttggattggcttatttgagcttatctactggcataag 22416869  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 15942657 - 15942697
Alignment:
Q  73 ccgatagcctgtttggattggcttatttgagcatatctact 113  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  15942657 ccgagagcctgtttggattggcttatttgagcctatctact 15942697  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 2295345 - 2295310
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactg 114  Q
    |||||||||||||||||||||||||| |||||||||    
T  2295345 gcctgtttggattggcttatttgagcttatctactg 2295310  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 4549462 - 4549501
Alignment:
Q  84 tttggattggcttatttgagcatatctactggcataagca 123  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  4549462 tttggattggcttatttgagattatctactggcataagca 4549501  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 6292643 - 6292600
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcact 6292600  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 21002306 - 21002267
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  21002306 tgtttggattggcttatttgagcttatctacttgcataag 21002267  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 41505825 - 41505786
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  41505825 tgtttggattggcttatttgagcttatctactgacataag 41505786  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 15477707 - 15477665
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||||||||| |||| |||||||| |||||||    
T  15477707 gcctgtttggattggcttattagagcttatctacttgcataag 15477665  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 37473561 - 37473519
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||||||  ||||||| ||||||||    
T  37473561 gcctgtttggattggcttatttgagattatctacgggcataag 37473519  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 38247481 - 38247439
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    ||||||||||||||| |||||||| | ||||||||||||||||    
T  38247481 gcctgtttggattgggttatttgaacttatctactggcataag 38247439  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 43230688 - 43230730
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||| ||||||||| | ||||||||||||||    
T  43230688 gcctgtttggattggcatatttgagcttctctactggcataag 43230730  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 28837278 - 28837315
Alignment:
Q  88 gattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  28837278 gattggcttatttgagcttatctactgacataagcact 28837315  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 41638227 - 41638268
Alignment:
Q  82 tgtttggattggcttatttgagcatatctactggcataagca 123  Q
    ||||||||||| |||| |||||| ||||||||||||||||||    
T  41638227 tgtttggattgtcttaattgagcctatctactggcataagca 41638268  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 2832120 - 2832080
Alignment:
Q  85 ttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||| |||||||||||| |||||||| |||||||||||    
T  2832120 ttggattagcttatttgagcttatctactagcataagcact 2832080  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 26461859 - 26461903
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    ||||||||||||| |||| |||||||||||| ||||| |||||||    
T  26461859 ctgtttggattggtttatatgagcatatctattggcacaagcact 26461903  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 30815571 - 30815619
Alignment:
Q  80 cctgtttggattggcttatttgagcatatctactggcataagcactagc 128  Q
    |||||||||| |||||||||||||  |||||||| ||||||| ||||||    
T  30815571 cctgtttggaatggcttatttgaggttatctactagcataagaactagc 30815619  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 32958789 - 32958745
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataagcact 125  Q
    |||||| ||||| ||||||||||| ||||||||| ||||||||||    
T  32958789 ctgtttagattgacttatttgagcttatctactgtcataagcact 32958745  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 34952354 - 34952314
Alignment:
Q  81 ctgtttggattggcttatttgagcatatctactggcataag 121  Q
    |||||||||||||||||||||||| |||||| ||| |||||    
T  34952354 ctgtttggattggcttatttgagcttatctattgggataag 34952314  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 159889 - 159923
Alignment:
Q  79 gcctgtttggattggcttatttgagcatatctact 113  Q
    |||||||||||||||||||||||||| ||||||||    
T  159889 gcctgtttggattggcttatttgagcttatctact 159923  T

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