View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_23 (Length: 326)
Name: NF21527_low_23
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 22 - 310
Target Start/End: Original strand, 45637302 - 45637590
Alignment:
| Q |
22 |
gggctgtgggaaaaagtacaacatgcctattctaattctaattgtgcagcagacttgattttccgtttggtgcaggacctttcacgtgatgagagccaac |
121 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45637302 |
gggctgtgggagaaagtacaacatgcctgttctaattctaattgtgcagcatacttgattttccgtttggtgcaggacctttcacgcgatgagagccaac |
45637401 |
T |
|
| Q |
122 |
gtttttctgcccttttgtggagcacgtggaaacatagaaatttgaagctctggcaaggcgtgtcggaaacagtggcgcatgtcgtggacatggctattca |
221 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| |
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| T |
45637402 |
gttttgctgcccttttgtggagcacgtggaaacatagaaatttaaagctctggcaaggcgtgtcgaaaacagtggcgcaggccgtggacatggctattca |
45637501 |
T |
|
| Q |
222 |
ccttgtagaggacttgagcatggctaatatgcatgctgcagcagcgcagagcagcaacaacattcctgcagttgcaatcagcagcagtg |
310 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45637502 |
ccttgtagaggactggagcatggctaatatgcctgctgcagcagtgcagagcagcaacaacattcctgcagttgcaatcagcagcagtg |
45637590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 22 - 308
Target Start/End: Original strand, 8273915 - 8274201
Alignment:
| Q |
22 |
gggctgtgggaaaaagtacaacatgcctattctaattctaattgtgcagcagacttgattttccgtttggtgcaggacctttcacgtgatgagagccaac |
121 |
Q |
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||||||||||| |||||||||||||||| | |||||||||||||||||||||| ||||||||| |||||| |||||||||||||| || | |||||||| |
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| T |
8273915 |
gggctgtgggagaaagtacaacatgcctgtgctaattctaattgtgcagcagatgtgattttccttttggtacaggacctttcacgcgacgcgagccaac |
8274014 |
T |
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| Q |
122 |
gtttttctgcccttttgtggagcacgtggaaacatagaaatttgaagctctggcaaggcgtgtcggaaacagtggcgcatgtcgtggacatggctattca |
221 |
Q |
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| T |
8274015 |
gttttgctgcccttttgtggagcatgtggaaacataggaatttgaagctttggcaaggagtgtcggaaacagtggcgcaggtcgtggacagggctgttca |
8274114 |
T |
|
| Q |
222 |
ccttgtagaggacttgagcatggctaatatgcatgctgcagcagcgcagagcagcaacaacattcctgcagttgcaatcagcagcag |
308 |
Q |
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|||||||||||||| | ||||||||||| ||| ||||||||||||||| |||||||||| |||| ||||| |||||||||||||||| |
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| T |
8274115 |
ccttgtagaggactggcgcatggctaatctgcctgctgcagcagcgcatagcagcaacagcatttctgcaattgcaatcagcagcag |
8274201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 29645477 - 29645344
Alignment:
| Q |
100 |
ctttcacgtgatgagagccaacgtttttctgcccttttgtggagcacgtggaaacatagaaatttgaagctctggcaaggcgtgtcggaaacagtggcgc |
199 |
Q |
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||||||||| | ||| |||||| |||||||| |||||||||||| |||||||||||||||| | ||||||| |||||||||||||||||| | || | |
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| T |
29645477 |
ctttcacgtaaagagggccaacaattttctgctcttttgtggagcttgtggaaacatagaaatctaaagctctcgcaaggcgtgtcggaaaccattgcac |
29645378 |
T |
|
| Q |
200 |
atgtcgtggacatggctattcaccttgtagagga |
233 |
Q |
| |
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| || ||||| | ||||||||||||||| ||||| |
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| T |
29645377 |
aggttgtggatagggctattcaccttgtggagga |
29645344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 11152986 - 11152789
Alignment:
| Q |
53 |
ctaattctaattgtgcagcagacttgattttccgtttggtgcaggacctttcacgtgatgagagccaacgtttttctgcccttttgtggagcacgtggaa |
152 |
Q |
| |
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|||||||||| |||| || ||||||||||| | |||||| ||||| |||||| | |||||||| |||| |||| |||||||||||||||||| |||||| |
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| T |
11152986 |
ctaattctaagtgtgttgccgacttgatttttcttttggtacaggatctttcatgcgatgagagtcaacattttgctgcccttttgtggagcatgtggaa |
11152887 |
T |
|
| Q |
153 |
acatagaaatttgaagctctggcaaggcgtgtcggaaacagtggcgcatgtcgtggacatggctattcaccttgtagaggacttgagcatggctaata |
250 |
Q |
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| T |
11152886 |
acatagaaacttaaagctctggcaaggcgtgtcggaaacagttgcgtaggttgtggacagggctattcatcttgttgaggactggagcatggctaata |
11152789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 8858936 - 8859133
Alignment:
| Q |
53 |
ctaattctaattgtgcagcagacttgattttccgtttggtgcaggacctttcacgtgatgagagccaacgtttttctgcccttttgtggagcacgtggaa |
152 |
Q |
| |
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|||||||||| |||| || ||||||||||| | |||||||||||| ||||||| |||||||| |||| |||| |||||||||||||||||| | |||| |
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| T |
8858936 |
ctaattctaagtgtgttgccgacttgatttttcttttggtgcaggatctttcacacgatgagagtcaactttttgctgcccttttgtggagcatgcggaa |
8859035 |
T |
|
| Q |
153 |
acatagaaatttgaagctctggcaaggcgtgtcggaaacagtggcgcatgtcgtggacatggctattcaccttgtagaggacttgagcatggctaata |
250 |
Q |
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||||| ||| || ||||||| ||||||||||||| ||||| | | | | || |||||| ||||||||| ||||| ||||||| |||||||||||||| |
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| T |
8859036 |
acataaaaacttaaagctctagcaaggcgtgtcgaaaacaattgagtaggttgtggaccgggctattcatcttgttgaggactggagcatggctaata |
8859133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 54 - 277
Target Start/End: Original strand, 41343485 - 41343708
Alignment:
| Q |
54 |
taattctaattgtgcagcagacttgattttccgtttggtgcaggacctttcacgtgatgagagccaacgtttttctgcccttttgtggagcacgtggaaa |
153 |
Q |
| |
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|||||||||||||||||||||| |||| |||| ||||||||||||||||||||| || | |||||||| |||| |||||||||||||||||| ||||||| |
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| T |
41343485 |
taattctaattgtgcagcagacgtgatcttccttttggtgcaggacctttcacgcgacgcgagccaacattttgctgcccttttgtggagcatgtggaaa |
41343584 |
T |
|
| Q |
154 |
catagaaatttgaagctctggcaaggcgtgtcggaaacagtggcgcatgtcgtggacatggctattcaccttgtagaggacttgagcatggctaatatgc |
253 |
Q |
| |
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|| ||| |||| || ||||||||||| || ||||| |||||||| || ||||||| |||| |||| ||||| ||||||| | | ||||||||| ||| |
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| T |
41343585 |
tccaggaatctgaaactttggcaaggcgtatcagaaactgtggcgcaggttgtggacagggctgttcatcttgttgaggactggtgtatggctaatttgc |
41343684 |
T |
|
| Q |
254 |
atgctgcagcagcgcagagcagca |
277 |
Q |
| |
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|||||| | ||| || ||||||| |
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| T |
41343685 |
ctgctgcggaagcacatagcagca |
41343708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 18685276 - 18685171
Alignment:
| Q |
87 |
tttggtgcaggacctttcacgtgatgagagccaacgtttttctgcccttttgtggagcacgtggaaacatagaaatttgaagctctggcaaggcgtgtcg |
186 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||| ||| || |||||||||||||||||||| |
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| T |
18685276 |
tttggtgcaggatctttcacacaatgagagccaacgttttgttgccctattgtggagcttgtggaaacatataaacttaaagctctggcaaggcgtgtct |
18685177 |
T |
|
| Q |
187 |
gaaaca |
192 |
Q |
| |
|
|||||| |
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|
| T |
18685176 |
gaaaca |
18685171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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