View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_26 (Length: 312)
Name: NF21527_low_26
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_26 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 22210403 - 22210144
Alignment:
| Q |
23 |
cagagagcaaacacacaaaggagatgactctttttgtagtcgctttgtaataaacgagttacattgacttcagttacattctcttatcttgaatttttct |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22210403 |
cagagagcaaacacacaaaggagatgactctttttgtagtcgctttgtaataaacgagttacattgacttcagttacattctcttatcttgaatttttct |
22210304 |
T |
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| Q |
123 |
ttctcttgaattaagtatcgctttgtaataatcaaatttttctttctctttattatacttacatcaataataaagattagaatatttcatatctcttgac |
222 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22210303 |
ttctcttgaattaagtatcgcttt-----------atttttctttctctttattatacttacatcaataataaagattagaatatttcatatctcttgac |
22210215 |
T |
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| Q |
223 |
agttaattttagatgactactttgaattcttaacgcatcatcccttgtaaagcatttacttatacatcatc |
293 |
Q |
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| T |
22210214 |
agttaattttagatgactactttgaattcttaacgcatcatcccttgtaaagcatttacttatacatcatc |
22210144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Original strand, 18994688 - 18994717
Alignment:
| Q |
264 |
cccttgtaaagcatttacttatacatcatc |
293 |
Q |
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| T |
18994688 |
cccttgtaaagcatttacttatacatcatc |
18994717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Original strand, 18990146 - 18990174
Alignment:
| Q |
264 |
cccttgtaaagcatttacttatacatcat |
292 |
Q |
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| T |
18990146 |
cccttgtaaagcatttacttatacatcat |
18990174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 104 - 256
Target Start/End: Complemental strand, 42708732 - 42708579
Alignment:
| Q |
104 |
tcttatcttgaatttttctttctcttgaattaagtatcgctttgtaataatcaaatttttctttctctttattata-cttacatcaataataaagattag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||| ||||||||||| ||||| |||||||||||||||| |
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| T |
42708732 |
tcttatcttgaatttttctttctcttgaattaagtatcactttgtaataaccaatttttcttttatctttattatatcttacgacaataataaagattag |
42708633 |
T |
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| Q |
203 |
aatatttcatatctcttgacagttaattttagatgactactttgaattcttaac |
256 |
Q |
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| T |
42708632 |
gatatttcatatctcttgacagttaattttagatgactgctttgaattcttaac |
42708579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 42708833 - 42708758
Alignment:
| Q |
45 |
gatgactctttttgtagtcgctttgtaataaacgagttacattgacttcagttacattctcttatcttgaattttt |
120 |
Q |
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| T |
42708833 |
gatgactctttttgtagtcgctttgtaataaacgagttacattcacttcagatacattctcttatcttgatttttt |
42708758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 8331 - 8303
Alignment:
| Q |
264 |
cccttgtaaagcatttacttatacatcat |
292 |
Q |
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| T |
8331 |
cccttgtaaagcatttacttatacatcat |
8303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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