View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_27 (Length: 310)
Name: NF21527_low_27
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_27 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 34820137 - 34819828
Alignment:
| Q |
1 |
gcgagacaaacaagaagaatgatgatagtatttgtacaaagccaccagttgagaaaagagttagctgccaagaacataaaggaacgagaataaatgtgtt |
100 |
Q |
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| T |
34820137 |
gcgagacaaccaagaagaatgatggtagtatttgtacaaagccaccagctgagaaaagagttagctgccaagaacataaaggaatgagactaaatgtgtt |
34820038 |
T |
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| Q |
101 |
tagtgcaaaagcaataagaagatctaagtctgaatcagaaatctttgctggaagttttattgacgagagtatcaccaaaaatgatgttggtatgtatgag |
200 |
Q |
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| T |
34820037 |
tagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgggagttttgttgacgagagtatcaccaaaaatgatgatggtacgtatgcg |
34819938 |
T |
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| Q |
201 |
gtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaaagaagaaagggaagagttatgaaggcgaggccaacaagaagaaggtcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |
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| T |
34819937 |
gtggttttgcaagctaagattgaccatcaactcgttgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgaggccaacaagaagaatgtcg |
34819838 |
T |
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| Q |
301 |
agtgcgttct |
310 |
Q |
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|||||||||| |
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| T |
34819837 |
agtgcgttct |
34819828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 295
Target Start/End: Complemental strand, 34820261 - 34820119
Alignment:
| Q |
153 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaa |
252 |
Q |
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| T |
34820261 |
agttttgttgacgagagcatcacaaaaaataatgttggtacgtcataggtgactttggaagctgaggttgaccatcaactcgctgaggcgtctcctttaa |
34820162 |
T |
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| Q |
253 |
agaagaaagggaagagttatgaaggcgaggccaacaagaagaa |
295 |
Q |
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| T |
34820161 |
agaagaaagggaagagtgataaaggcgagacaaccaagaagaa |
34820119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 34820612 - 34820530
Alignment:
| Q |
153 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
235 |
Q |
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|||||| ||||||| |||||||| |||| |||||| ||||||| |||||||||||| ||| | || |||||||||| ||||| |
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| T |
34820612 |
agttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatcagctcgc |
34820530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 34820377 - 34820296
Alignment:
| Q |
154 |
gttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
235 |
Q |
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| T |
34820377 |
gttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaactcgc |
34820296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 34820729 - 34820653
Alignment:
| Q |
153 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca |
229 |
Q |
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| T |
34820729 |
agttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatca |
34820653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 34835165 - 34835101
Alignment:
| Q |
29 |
tatttgtacaaagccaccagttgagaaaagagttagctgccaagaacataaaggaacgagaataa |
93 |
Q |
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| T |
34835165 |
tatttgtacaaagacgccggtcgagaaaagagttaggtgtcatgaacataaaggaatgagaataa |
34835101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 34820846 - 34820807
Alignment:
| Q |
153 |
agttttattgacgagagtatcaccaaaaatgatgttggta |
192 |
Q |
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| T |
34820846 |
agttttgttgacgagagtatcacaaaaaatgatgttggta |
34820807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 34820495 - 34820413
Alignment:
| Q |
153 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
235 |
Q |
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| T |
34820495 |
agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcagctcgc |
34820413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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