View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21527_low_29 (Length: 302)

Name: NF21527_low_29
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21527_low_29
NF21527_low_29
[»] chr3 (1 HSPs)
chr3 (19-233)||(45455705-45455919)
[»] chr5 (2 HSPs)
chr5 (19-214)||(40165337-40165532)
chr5 (169-213)||(40165206-40165250)
[»] chr2 (2 HSPs)
chr2 (19-67)||(7827089-7827137)
chr2 (169-219)||(7827154-7827204)
[»] chr1 (3 HSPs)
chr1 (192-233)||(6922175-6922216)
chr1 (192-233)||(38237662-38237703)
chr1 (231-267)||(40981607-40981643)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 45455705 - 45455919
Alignment:
Q  19 agaaggcaaagtttggagaggattcaagggaagacaaataaaactaataagaaatatatacatgaaccaagaaaaacaatttctctcagcctaagcatcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45455705 agaaggcaaagtttggagaggattcaagggaagacaaataaaactaataagaaatatatacatgaaccaagaaaaacaatttctctcagcctaagcatcc 45455804  T
Q  119 caaatttccaactttattttaannnnnnngaaaattaacagtagaattagaatcttaaatgattctcatgttgttgacaacaatcaatgatcatggaata 218  Q
    ||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45455805 caagtttccaactttattttaatttttttgaaaattaacagtagaattagaatcttaaatgattctcatgttgttgacaacaatcaatgatcatggaatt 45455904  T
Q  219 ggcatgtgtcagagt 233  Q
    ||| | |||||||||    
T  45455905 ggcctatgtcagagt 45455919  T

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Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 40165532 - 40165337
Alignment:
Q  19 agaaggcaaagtttggagaggattcaagggaagacaaataaaactaataagaaatatatacatgaaccaagaaaaacaatttctctcagcctaagcatcc 118  Q
    |||||||||||||| |||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  40165532 agaaggcaaagtttagagaggattctaaggaagacaaataaaactaataagtaatatttacatgaaccaagaaaaacagtttctctcagcctaagcatcc 40165433  T
Q  119 caaatttccaactttattttaannnnnnngaaaattaacagtagaattagaatcttaaatgattctcatgttgttgacaacaatcaatgatcatgg 214  Q
    ||| ||||||||||||||||||       ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40165432 caactttccaactttattttaatttttaagaaaaataacagtagaattagaatcttaaatgatcctcatgttgttgacaacaatcaatgatcatgg 40165337  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 40165250 - 40165206
Alignment:
Q  169 aatcttaaatgattctcatgttgttgacaacaatcaatgatcatg 213  Q
    ||||||||||||| |||||||| |||||| ||||||| |||||||    
T  40165250 aatcttaaatgatcctcatgtttttgacagcaatcaaggatcatg 40165206  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 7827089 - 7827137
Alignment:
Q  19 agaaggcaaagtttggagaggattcaagggaagacaaataaaactaata 67  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||    
T  7827089 agaaggcaaagtttagagaggattcaaaggaagacaaataaaactaata 7827137  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 7827154 - 7827204
Alignment:
Q  169 aatcttaaatgattctcatgttgttgacaacaatcaatgatcatggaatag 219  Q
    |||||||| |||| |||| ||||||| |||||||||| |||||||||||||    
T  7827154 aatcttaattgatcctcaagttgttgtcaacaatcaacgatcatggaatag 7827204  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 6922216 - 6922175
Alignment:
Q  192 ttgacaacaatcaatgatcatggaataggcatgtgtcagagt 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  6922216 ttgacaacaatcaatgatcatggaatatgcatgtgtcagagt 6922175  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 38237662 - 38237703
Alignment:
Q  192 ttgacaacaatcaatgatcatggaataggcatgtgtcagagt 233  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  38237662 ttgacaacaatcaatgatcatggaataagcatgtgtcagagt 38237703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 40981607 - 40981643
Alignment:
Q  231 agtaggtttaagggttggaaattagggtaagcatgtt 267  Q
    |||||||||| || |||||||||||||||||||||||    
T  40981607 agtaggtttagggtttggaaattagggtaagcatgtt 40981643  T

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