View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21527_low_31 (Length: 301)

Name: NF21527_low_31
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21527_low_31
NF21527_low_31
[»] chr4 (1 HSPs)
chr4 (10-301)||(32572206-32572497)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 301
Target Start/End: Complemental strand, 32572497 - 32572206
Alignment:
Q  10 attattcttgggaccgggttcatgcatgtactccctgattcgtacgagatgttgtggagtgattgtttggatgagaaaccatggcgcgagtttccctttt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  32572497 attattcttgggaccgggttcatgcatgtactccctgattcgtacgagatgttgtggagtgattgtttagatgagaaaccatggcacgagtttccctttt 32572398  T
Q  110 cgggacttgtggctatgttctccgcggtggtcacaatgatggtcgattctatagctactagttattatagtaagaagggtaagagcggagttgtgattcc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32572397 cgggacttgtggctatgttctccgcggtggtcacaatgatggtcgattctatagctactagttattatagtaagaagggtaagagcggagttgtgattcc 32572298  T
Q  210 agagagccatggtggagatgatcaagagattggacattcacatggtggtcaccatcatattcataatgggttcaagacagatgaaagtgacg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32572297 agagagccatggtggagatgatcaagagattggacattcacatggtggtcaccatcatattcataatgggttcaagacagaagaaagtgacg 32572206  T

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