View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21527_low_33 (Length: 285)
Name: NF21527_low_33
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 1980831 - 1980597
Alignment:
| Q |
14 |
aaatctcatgtccttaacactcgtacataattttttctatttagtcaattgttgttctctttttgaattaaccctccaattctagggatagtggttcgga |
113 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
1980831 |
aaatctcatgtccttgacactcgtacataattttttctatttagtcaattgttgttctctttttggattaaccctccaattctagtgatagtggttcgga |
1980732 |
T |
|
| Q |
114 |
atttgaccaaagaggtaagtaatgtttagtaaaaaattgttctactaaagaatcgaactcatgttattttaaaaagtttatcatttgtcaaaaaacacat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
1980731 |
atttgaccaaagaggtaagtaatgtttagcaaaaaattgttctactcaagaatcgaactcatgttattttaaaaagttcgtcatttgccaaaaaacacat |
1980632 |
T |
|
| Q |
214 |
ttaacccgggaacttatgcactattaattttctac |
248 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1980631 |
ttaactcgggaacttatgcactattaattttctac |
1980597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 39634387 - 39634264
Alignment:
| Q |
123 |
aagaggtaagtaatgtttagtaaaaaattgttctactaaagaatcgaactcatgttattttaaaaagtttatcatttgtcaaaaaacacatttaacccgg |
222 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| | || | ||| | |||||| ||||||||||||||||| |
|
|
| T |
39634387 |
aagaggtaagtaaagtttgaccaaaaattgttctactcaagaatcgaactcatgttatcctgaacaatttgttatttgt-taaaaacacatttaacccta |
39634289 |
T |
|
| Q |
223 |
gaacttatgcactattaattttcta |
247 |
Q |
| |
|
||| ||| |||||||| ||||||| |
|
|
| T |
39634288 |
gaatgtattcactattatttttcta |
39634264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 39634519 - 39634440
Alignment:
| Q |
5 |
ttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattgttgttctctttttgaattaa |
84 |
Q |
| |
|
||||||||||||| ||| || | |||||| |||| || | ||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
39634519 |
ttgtgacaaaaatttcacgtttctcacactcatacaaaaatgtttctatttagtcaattgtcgttctctttttgtattaa |
39634440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44100580 - 44100643
Alignment:
| Q |
1 |
tctcttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattg |
64 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||||||| || |||||||||||||||||||| |
|
|
| T |
44100580 |
tctcttgtgacaaaaatatcatgtctttcacactcgtacacaagtttttctatttagtcaattg |
44100643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37225913 - 37225976
Alignment:
| Q |
1 |
tctcttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattg |
64 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
37225913 |
tctcttgtgactaaaatctcatgtgattcacactcgtaaacaatattttctatttagtcaattg |
37225976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 32491816 - 32491915
Alignment:
| Q |
147 |
aaattgttctactaaagaatcgaactcatgttattttaaaaagtttatcatttgtcaaaaaacacatttaacccgggaacttatgcactattaattttct |
246 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| || || | ||| |||||| | ||||||||||||||||| ||| |||||||||||| |||||| |
|
|
| T |
32491816 |
aaattgttctactcaataatcgaatacatgttatcttgaacaatttgtcattta-ctaaaaacacatttaaccctagaaggtatgcactattatttttct |
32491914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 6276862 - 6276946
Alignment:
| Q |
1 |
tctcttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattgttgttctctttttgaattaac |
85 |
Q |
| |
|
|||| |||||||||||| ||||||| || ||| ||||||| || || ||||||| ||||||||| |||||| ||||| |||||| |
|
|
| T |
6276862 |
tctcctgtgacaaaaatttcatgtctttcacattcgtacaaaagttcttctattaagtcaattgccgttctcattttgtattaac |
6276946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 24987393 - 24987349
Alignment:
| Q |
45 |
tttttctatttagtcaattgttgttctctttttgaattaaccctc |
89 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
24987393 |
tttttctatttagtcaattgacgttctctttttgtattaaccctc |
24987349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 21908200 - 21908243
Alignment:
| Q |
45 |
tttttctatttagtcaattgttgttctctttttgaattaaccct |
88 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
21908200 |
tttttctatttagtcaattgtcgttctctttttgtattagccct |
21908243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 24987280 - 24987212
Alignment:
| Q |
148 |
aattgttctactaaagaatcgaactcatgttattttaaaaagtttatcatttgtcaaaaaacacatttaa |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| | |||| ||| ||||||| | |||||||||||||| |
|
|
| T |
24987280 |
aattgttctacttaagaatcgaactcatattatactgaaaattttgtcatttg-ctaaaaacacatttaa |
24987212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 30767797 - 30767872
Alignment:
| Q |
8 |
tgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattgttgttctctttttgaatta |
83 |
Q |
| |
|
|||||||||| ||||||| | ||||||||| | || || |||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
30767797 |
tgacaaaaatatcatgtctctcacactcgtaaaaaagttcttctatttagtcaactgtcgttctctttttgtatta |
30767872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 27128898 - 27128824
Alignment:
| Q |
145 |
aaaaattgttctactaaagaatcgaactcatgttattttaaaaagtttatcatttgtcaaaaaacacatttaaccc |
220 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||| || || | ||||||||| | | ||||||||||||||||| |
|
|
| T |
27128898 |
aaaaattgttctactaaaaaatcaaattcatgttatcttgaacaatttatcattggac-aaaaacacatttaaccc |
27128824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 25717002 - 25717077
Alignment:
| Q |
1 |
tctcttgtgacaaaaatctcatgtccttaacactcgtacataattttttctatttagtcaattgttgttctctttttg |
78 |
Q |
| |
|
|||||||||| |||| ||||||||| | |||| |||||| |||||| |||||||||||||||| |||| |||||||| |
|
|
| T |
25717002 |
tctcttgtgagaaaagtctcatgtctcttacacacgtacacaatttt-tctatttagtcaattg-tgttttctttttg |
25717077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University