View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_34 (Length: 284)
Name: NF21527_low_34
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 16225955 - 16226215
Alignment:
| Q |
14 |
aggtagaaggtgtttgcacaaacattgtgtctaattgtgctgatgaacatgtaca-----catcacaatgtgaagcctttggaagaggtgttaaacctat |
108 |
Q |
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| T |
16225955 |
aggtagaaggtgtttgcacaaacattgtggctaattgtgctgatgaacatgtacattgtccatcacaatgtgaagcctttggaagaggtgttaaacctat |
16226054 |
T |
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| Q |
109 |
aggatggagttgtgacttctacaacttatgcacatgtacttacgaacatccagtaacaggacaatttggagttaatcaatgcgaaattgggatgggacta |
208 |
Q |
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| T |
16226055 |
aggatcgagttgtgacttctacaacttatgcacatgtacttacgcacatcaagtaacaggacaatttggagttaatcaatgcgaaattgggatgggacta |
16226154 |
T |
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| Q |
209 |
tgcactgatgattgtaggaatgattgttgttatgcaaggtgtgaaatcaaatatcctaagt |
269 |
Q |
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| T |
16226155 |
tgcactgatgattgtaggaatgattgttgttatgcaaggtgtgaaatcaaatatcctaagt |
16226215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 16180877 - 16181137
Alignment:
| Q |
14 |
aggtagaaggtgtttgcacaaacattgtgtctaattgtgctgatgaacatgtaca-----catcacaatgtgaagcctttggaagaggtgttaaacctat |
108 |
Q |
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| T |
16180877 |
aggttgaaggtgtttgcacaaacattgtggctaattgtgctcatgaacatgtatattgtccatcacaatgtgaagcctttggaagaggtgttaaacctat |
16180976 |
T |
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| Q |
109 |
aggatggagttgtgacttctacaacttatgcacatgtacttacgaacatccagtaacaggacaatttggagttaatcaatgcgaaattgggatgggacta |
208 |
Q |
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| T |
16180977 |
aggatggagttgtgacttctacaacttatgcacatgtacttacgaacatccagtaacaggacaatttggagttaatcaatgcgaaattgggatgggacta |
16181076 |
T |
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| Q |
209 |
tgcactgatgattgtaggaatgattgttgttatgcaaggtgtgaaatcaaatatcctaagt |
269 |
Q |
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| T |
16181077 |
tgcaccgatgattgtaggaatgattgttgttatgcaaggtgtgaaatcaaatatcctaagt |
16181137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 85 - 269
Target Start/End: Original strand, 16207256 - 16207440
Alignment:
| Q |
85 |
ctttggaagaggtgttaaacctataggatggagttgtgacttctacaacttatgcacatgtacttacgaacatccagtaacaggacaatttggagttaat |
184 |
Q |
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| T |
16207256 |
ctttggaaaaggtgctaaacctataagcacgaattgtgacttctacaacttatgcacatgttcttatgaacatccagtaacaggacaatttggagttaat |
16207355 |
T |
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| Q |
185 |
caatgcgaaattgggatgggactatgcactgatgattgtaggaatgattgttgttatgcaaggtgtgaaatcaaatatcctaagt |
269 |
Q |
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| T |
16207356 |
caatgcagtattgggatgggactatgcactagtgattgtaggaatgattgttgtgataaaaggtgtactagcaaatatcctaagt |
16207440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 250
Target Start/End: Original strand, 16215664 - 16215824
Alignment:
| Q |
81 |
aagcctttggaagaggtgttaaacctataggatggagttgtgacttctacaacttatgcacatgtacttacgaacatccagtaacaggacaatttggagt |
180 |
Q |
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| T |
16215664 |
aagcctttggaaaaggtgttaaacttataggcacgaattgtgacttctacaatttatgcacttgtacttacgatcatc---tacca-tataatt-----t |
16215754 |
T |
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| Q |
181 |
taatcaatgcgaaattgggatgggactatgcactgatgattgtaggaatgattgttgttatgcaaggtgt |
250 |
Q |
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| T |
16215755 |
tgatctatgcgatattgggatgggactctgcactgaggattgtatggatgattgttgtgaagcaaggtgt |
16215824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 16211438 - 16211510
Alignment:
| Q |
81 |
aagcctttggaagaggtgttaaacctataggatggagttgtgacttctacaacttatgcacatgtacttacga |
153 |
Q |
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| T |
16211438 |
aagccgttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacatgtacttacga |
16211510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 16211535 - 16211598
Alignment:
| Q |
187 |
atgcgaaattgggatgggactatgcactgatgattgtaggaatgattgttgttatgcaaggtgt |
250 |
Q |
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| T |
16211535 |
atgcgatattgggatgggactctgcactaaggattgtaggagtgattgttgtgatgcaaagtgt |
16211598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 158
Target Start/End: Original strand, 16220656 - 16220727
Alignment:
| Q |
87 |
ttggaagaggtgttaaacctataggatggagttgtgacttctacaacttatgcacatgtacttacgaacatc |
158 |
Q |
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| T |
16220656 |
ttggaagtggtgctaaacttataggcacgaattgtgacttctacaacttatgcacctgtacttacgatcatc |
16220727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 16223062 - 16223138
Alignment:
| Q |
85 |
ctttggaagaggtgttaaacctataggatggagttgtgacttctacaacttatgcacatgtacttacgaacatccag |
161 |
Q |
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| T |
16223062 |
ctttggaagaggtgctaaacttttagaatataattgtgacttctataacctatgcacttgtactttcgaacatccag |
16223138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 16222991 - 16223029
Alignment:
| Q |
19 |
gaaggtgtttgcacaaacattgtgtctaattgtgctgat |
57 |
Q |
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| T |
16222991 |
gaaggtgtttgcacaaacgttgtggctaattgtgctgat |
16223029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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