View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_39 (Length: 250)
Name: NF21527_low_39
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_39 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 228288 - 228528
Alignment:
| Q |
13 |
aatatgcacttataccaacaataaaatgaatttgtacccnnnnnnnnnnt---gaaccatgcaatggccaatttcaagttcaaaatcatttctaaggttc |
109 |
Q |
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| T |
228288 |
aatatgcacttataccaacaataaaatgaatttgtacccaaaaaaaaaaaaaagaaccatgcaatggccaatttcaagttcaaaatcatctctaaggttc |
228387 |
T |
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| Q |
110 |
ttgcagatagattagccaaaatcatgcctcaaattgtttcaactgagcagaggggtttaatacaaggaagtaacattaaggattgcatctgcttagcatc |
209 |
Q |
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| T |
228388 |
ttggagatagattagccaaaatcatgcctgaaattgtttcaactgagcagaggggtttaatacaaggaagtaacattaaggattgcatctgtttagcatc |
228487 |
T |
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| Q |
210 |
agaagctgcaaatcttcttcataagaaagcatttgggggaa |
250 |
Q |
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| T |
228488 |
agaagctgcaaatcttcttcataagaaagcatttgggggaa |
228528 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 14142026 - 14141968
Alignment:
| Q |
73 |
atggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagccaaaat |
131 |
Q |
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| T |
14142026 |
atggccaatttcaagttcaagattatatctaagattattgctgataggttagccaaaat |
14141968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 28358 - 28414
Alignment:
| Q |
69 |
tgcaatggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagc |
125 |
Q |
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| T |
28358 |
tgcaatggccaatttcaagtttaaaatcttgtccaagatccttgcagacagattagc |
28414 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 17630334 - 17630282
Alignment:
| Q |
73 |
atggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagc |
125 |
Q |
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| T |
17630334 |
atggcaaattttaaattcaaaatcatttctaagattttagcagatagattagc |
17630282 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 32019953 - 32020005
Alignment:
| Q |
73 |
atggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagc |
125 |
Q |
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| T |
32019953 |
atggcaaattttaaattcaaaatcatttctaagattttagcagatagattagc |
32020005 |
T |
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