View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_4 (Length: 517)
Name: NF21527_low_4
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 507
Target Start/End: Original strand, 5932091 - 5932586
Alignment:
| Q |
17 |
catgttggtcagtttgattgactttaaaacaaaaaattgtacgtaataattctcacaaaaataaagagaattgaaataatatctatcaataatcaatatt |
116 |
Q |
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| T |
5932091 |
catgttggtcagtttgattgactttaaaacaaaaaattgtacgtaataattctcacaaaaataaagagaattgaaataatatctatcaataatcaatatt |
5932190 |
T |
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| Q |
117 |
cacc---acccactttgtgttgtgcaattattattttttccttcatttggttttttagttgcacttttgtaagattctttgaactcaaccaacaaaatct |
213 |
Q |
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| T |
5932191 |
caccaccacccactttgtgttgtgcaattattattttttccttcatttggtttttttgttgcacttttgtaagattctttgaactcaaccaacaaaatct |
5932290 |
T |
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| Q |
214 |
atttggatttgtatgattcagtgcttattttgatagatattttatgattcttatgatccaatatagtttttgtctttattgaacttttatagagtatcat |
313 |
Q |
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| T |
5932291 |
atttggatttgtatgattcagtgcttattttgatagatattttatgattcttatgatccaatatagtttttgtctttattgaacttttatagagtatcat |
5932390 |
T |
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| Q |
314 |
gctttaaattttgtttttattccaaagtttgaatcttttct--aacttaagaaatgggtgtgtgctgtttttgacagtttcaagaagctgatttgaaatt |
411 |
Q |
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| T |
5932391 |
gctttaaattttgtttttattccaaagtttgaatcttttcttcaacttaagaaatgggtgtgtgctgtttttgacagtttcaagaagctgatttgaaatt |
5932490 |
T |
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| Q |
412 |
ttgatagagaaaacttgaaagctgaaaatgacaattgaaactgagaagaagaaaacaaggaagaacaaggaagttgttgatgagaatgtgcctttg |
507 |
Q |
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| T |
5932491 |
ttgatagagaaaacttgaaagctgaaaatgacaattgaaactgagaagaagaaaacaaggaagaacaaggaagttgttgatgagaatgtgcctttg |
5932586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 422 - 507
Target Start/End: Original strand, 5982805 - 5982896
Alignment:
| Q |
422 |
aaacttgaaagctgaaaatgacaattgaaact------gagaagaagaaaacaaggaagaacaaggaagttgttgatgagaatgtgcctttg |
507 |
Q |
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|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||||| ||||||| ||||| |||||| |
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| T |
5982805 |
aaacttgaaagctgaaaatgacaattgaaactcttgtagagaataggaaaacaaggaagaagaaggaagtggttgatggaaatgtacctttg |
5982896 |
T |
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