View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_41 (Length: 245)
Name: NF21527_low_41
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45455623 - 45455397
Alignment:
| Q |
1 |
ttattcattgttactggaataaaatggttatctaatgaattaggatacgagtgacaatgagctgggaggagagttcatacattgataaagttgggagaac |
100 |
Q |
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| T |
45455623 |
ttattcattgctactggaataaaatggttatctaatgaattaggatacgagtgacaatgagctgggaggagagttcatacattggtaaagttgggagaac |
45455524 |
T |
|
| Q |
101 |
aattattgatgccggtaaactcttctgacttggcctcttttatacgtaactctaatgattatcataaattactgtggtgaacatggactaatgatttaga |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45455523 |
aattattgatgctggtaaactcttctgacttggcctcttttatacgtaactctaatgattatcataaattactgtggtgaacatggactaatgatttaga |
45455424 |
T |
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| Q |
201 |
atgcattaagtttatgtatgcttattc |
227 |
Q |
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| T |
45455423 |
atgcattaagtttatgtatgcttattc |
45455397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 40165623 - 40165666
Alignment:
| Q |
12 |
tactggaataaaatggttatctaatgaattaggatacgagtgac |
55 |
Q |
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| T |
40165623 |
tacttgaataaaatggttatctaatgaattaggatacaagtgac |
40165666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 47963135 - 47963026
Alignment:
| Q |
104 |
tattgatgccggtaaactcttctgacttggcctc-ttttatacgtaa-ct-ctaatgattatcataaattactgtggtgaacatggactaatgatttaga |
200 |
Q |
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| T |
47963135 |
tattgatgcgggtaaactcttcttacttagtctcattttatatttaatctactaacgattataaaaaattactctggcaaacatggactaatgatttaga |
47963036 |
T |
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| Q |
201 |
atgcattaag |
210 |
Q |
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||||||||| |
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| T |
47963035 |
ttgcattaag |
47963026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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