View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21527_low_43 (Length: 242)

Name: NF21527_low_43
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21527_low_43
NF21527_low_43
[»] chr5 (3 HSPs)
chr5 (1-235)||(32013158-32013392)
chr5 (1-235)||(31793036-31793270)
chr5 (1-224)||(32024578-32024801)
[»] chr3 (5 HSPs)
chr3 (5-224)||(48132058-48132277)
chr3 (1-224)||(48113150-48113373)
chr3 (113-224)||(48141585-48141696)
chr3 (1-65)||(48141744-48141808)
chr3 (104-146)||(43871884-43871926)
[»] chr8 (3 HSPs)
chr8 (116-224)||(25242616-25242724)
chr8 (113-224)||(25254157-25254268)
chr8 (1-65)||(25254316-25254380)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32013392 - 32013158
Alignment:
Q  1 caatcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattt 100  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||| |||    
T  32013392 caatcacaattatgccttcattttgtttgaaaccatctaactcaacaagcaactgatttaaagtcaacttcgtgtacatttggtcatttgaatttggttt 32013293  T
Q  101 tccaccaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaaca 200  Q
    |||||||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  32013292 tccaccaatagcatcaatctcatcaagaaagattatacaaggcgcacgcttttttgcagcagcaaaaagatttctcaccctttgtgcaccaacaccaaca 32013193  T
Q  201 atcgtctcttcaaattcacgtccattacttgagaa 235  Q
    ||||||||||||||||||||||||||  |||||||    
T  32013192 atcgtctcttcaaattcacgtccattggttgagaa 32013158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31793270 - 31793036
Alignment:
Q  1 caatcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||| ||||| |||    
T  31793270 caatcacaattatgccttcattttgttcgagtccatctaactcaacaagcatttgatataaagtcaacttcgagtacatttggtaatttggatttggttt 31793171  T
Q  101 tccaccaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaaca 200  Q
    |||||||||| |||||||||||||||||||||||||| || | ||||  ||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  31793170 tccaccaatagcatcaatctcatcaataaagattatacaatgtgcacgtttttttgcagcagcaaaaagatctctcaccctttgtgcaccaacaccaaca 31793071  T
Q  201 atcgtctcttcaaattcacgtccattacttgagaa 235  Q
    |||| ||||||||||||||||||||||||||||||    
T  31793070 atcgcctcttcaaattcacgtccattacttgagaa 31793036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32024801 - 32024578
Alignment:
Q  1 caatcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||  |||    
T  32024801 caatcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcatgtacatttggtcgtttgaatttagttt 32024702  T
Q  101 tccaccaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaaca 200  Q
    ||||||||   |||||||||||||||||||||||||| |||||   |  ||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  32024701 tccaccaaacgcatcaatctcatcaataaagattatacaaggcaaccgtttttttgcagcagcaaaaagatctctcaccctttgtgcaccaacaccaaca 32024602  T
Q  201 atcgtctcttcaaattcacgtcca 224  Q
    | | ||||||||||||||||||||    
T  32024601 accatctcttcaaattcacgtcca 32024578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 48132058 - 48132277
Alignment:
Q  5 cacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttcca 104  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||  |||  |||||||    
T  48132058 cacaattatgccttcattttgtttgaatccatctaactcaacaagcatttgatttaaagtcatcttcatgtacatttggtcttttgcgtttcgttttcca 48132157  T
Q  105 ccaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcg 204  Q
    |||||| |||||||||||||||||||||||||| |||| |  | |||||||||||| ||||||||||||| ||||||  |||||||||||||||||| |     
T  48132158 ccaatagcatcaatctcatcaataaagattatacaaggagaccgcttttttgcagcagcaaaaagatctcgcacccttcgtgcaccaacaccaacaaaca 48132257  T
Q  205 tctcttcaaattcacgtcca 224  Q
    ||||||||||||||| ||||    
T  48132258 tctcttcaaattcacttcca 48132277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 48113150 - 48113373
Alignment:
Q  1 caatcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattt 100  Q
    |||||||||||||||| || ||||||||||  |||||||||||||||||||||||||||||||||| |||| ||||||| || || |||| ||||  |||    
T  48113150 caatcacaattatgccatcgttttgtttgaaaccatctaactcaacaagcatttgatttaaagtcatcttcatgtacatttgatcctttgcatttcgttt 48113249  T
Q  101 tccaccaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaaca 200  Q
    |||||||||| |||||||||| ||||||||||||||| ||||||  | |||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  48113250 tccaccaatagcatcaatctcgtcaataaagattatacaaggcgaccgcttttttgcagcagcaaaaagatctctcacccttcgtgcaccaacaccaaca 48113349  T
Q  201 atcgtctcttcaaattcacgtcca 224  Q
    | | ||||||||||||||| ||||    
T  48113350 aacatctcttcaaattcacttcca 48113373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 48141696 - 48141585
Alignment:
Q  113 atcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttca 212  Q
    ||||||||||||||||||||||||| |||| |    |||||||||||||||||||||||||||||||||  ||||||||||| | |  | | ||||||||    
T  48141696 atcaatctcatcaataaagattatacaaggtgacttcttttttgcagcggcaaaaagatctctcacccttcgtgcaccaacatccattagcatctcttca 48141597  T
Q  213 aattcacgtcca 224  Q
    ||||||| ||||    
T  48141596 aattcacttcca 48141585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 48141808 - 48141744
Alignment:
Q  1 caatcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtc 65  Q
    |||||||||||||||| || |||||||||| |||||| | |||||  ||||||||||||||||||    
T  48141808 caatcacaattatgccatcgttttgtttgaatccatcgagctcaaagagcatttgatttaaagtc 48141744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 43871884 - 43871926
Alignment:
Q  104 accaataacatcaatctcatcaataaagattatagaaggcgca 146  Q
    ||||||| ||||||||||||||| |||||||||||||||||||    
T  43871884 accaatagcatcaatctcatcaacaaagattatagaaggcgca 43871926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 224
Target Start/End: Original strand, 25242616 - 25242724
Alignment:
Q  116 aatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttcaaat 215  Q
    |||||||||||||||||||||| |||| |  | |||||||||||| ||||||||||||| ||||||  |||||||||||||||||| | |||||||||||    
T  25242616 aatctcatcaataaagattatacaaggagaccgcttttttgcagcagcaaaaagatctcgcacccttcgtgcaccaacaccaacaaacatctcttcaaat 25242715  T
Q  216 tcacgtcca 224  Q
    |||| ||||    
T  25242716 tcacttcca 25242724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 224
Target Start/End: Complemental strand, 25254268 - 25254157
Alignment:
Q  113 atcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttca 212  Q
    ||||||||||||||||||||||||| |||| |    |||||||||||||||||||||||||||||||||  ||||||||||| | |  | | ||||||||    
T  25254268 atcaatctcatcaataaagattatacaaggtgacttcttttttgcagcggcaaaaagatctctcacccttcgtgcaccaacaaccattagcatctcttca 25254169  T
Q  213 aattcacgtcca 224  Q
    ||||||| ||||    
T  25254168 aattcacttcca 25254157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 25254380 - 25254316
Alignment:
Q  1 caatcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtc 65  Q
    |||||||||||||||| || |||||||||| |||||| | |||||  ||||||||||||||||||    
T  25254380 caatcacaattatgccatcgttttgtttgaatccatcgagctcaaagagcatttgatttaaagtc 25254316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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