View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_44 (Length: 241)
Name: NF21527_low_44
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 36428609 - 36428818
Alignment:
| Q |
23 |
aagaacaactccatttctggtgaagaaaaactttttgatgttctaaatggtgggcatttccatgttcttttcctctttggagctggtggacaatcaatga |
122 |
Q |
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| T |
36428609 |
aagaacaactcgatttctggtgaagaaaaactttttgatgttctaaatggtgggcatttccatgttcttttcctctttggagctggtggacaatcaatga |
36428708 |
T |
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| Q |
123 |
tttctggtattttgaatcttttaccttttggtgtagtgaaaccatcacttgaacaaatattttcttcgttaacctcctcaacattagtagtagtactctc |
222 |
Q |
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| T |
36428709 |
tttctggtattttgaatcttttaccttttggtgtagtgaaaccatcactcgaacaaatattttcttcgttaacctcctcaacattagtagtagtactctc |
36428808 |
T |
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| Q |
223 |
aacttcttct |
232 |
Q |
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|||||||||| |
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| T |
36428809 |
aacttcttct |
36428818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 36308391 - 36308472
Alignment:
| Q |
127 |
tggtattttgaatcttttaccttttggtgtagtgaaaccatcacttgaacaaatattttcttcgttaacctcctcaacatta |
208 |
Q |
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| T |
36308391 |
tggtattttgaatcttctaccctttggtgtaatgaagccatcacttgaacaaatattttcatcatcaacgtcctctacatta |
36308472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 36309902 - 36309956
Alignment:
| Q |
135 |
tgaatcttttaccttttggtgtagtgaa---accatcacttgaacaaatattttc |
186 |
Q |
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| T |
36309902 |
tgaatattttaccctttggtgtagtgaagccatcatcacttgaacaaatattttc |
36309956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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