View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_45 (Length: 240)
Name: NF21527_low_45
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_45 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 34819455 - 34819678
Alignment:
| Q |
17 |
attgttattaagctccaagcacttggcttcaacatctcgcttatcttcctcgactttctttttctcatcctttgtcgtctttaaggagttgcgagattcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819455 |
attgttattaagctccaagcacttggcttcaacatctcgcttatcttcctcgactttctttttctcatcctttgtcgtctttaaggagttgcgagattcc |
34819554 |
T |
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| Q |
117 |
ttcaactggtcctccaaggttttaacccttaacttcaagtcttcgttctcctgctttagcctatctgcattcgattttacagcctgaaacttttcctcca |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819555 |
ttcaactggtcctccaaggttttaaccctcaacttcaagtcttcgttctcctgctttagcctatctgcattcgattttacagcctgaaacttttcctcca |
34819654 |
T |
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| Q |
217 |
tcacttcaagcaacaccacagagc |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
34819655 |
tcacttcaagcaacaccacagagc |
34819678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 22080589 - 22080633
Alignment:
| Q |
188 |
cgattttacagcctgaaacttttcctccatcacttcaagcaacac |
232 |
Q |
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| T |
22080589 |
cgattttacagcctaaaaatcttcctccatcacttcaagcaacac |
22080633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 22080435 - 22080561
Alignment:
| Q |
17 |
attgttattaagctccaagcacttggcttcaacatctcgcttatcttcctcgactttctttttctcatcctttgtcgtctttaaggagttgcgagattcc |
116 |
Q |
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||||||||||||||| || ||| |||||| |||| ||||||| |||| |||||||| ||||||| | | | ||||||||||| |||| ||| ||| |
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| T |
22080435 |
attgttattaagctctaacagcttagcttcagcatcccgcttattctcctaaactttcttcttctcatacctcgctgtctttaaggaattgccagaatcc |
22080534 |
T |
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| Q |
117 |
ttcaactggtcctccaaggttttaacc |
143 |
Q |
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||||||| ||||| |||| ||||||| |
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| T |
22080535 |
ttcaactaatcctctaaggatttaacc |
22080561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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