View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_47 (Length: 239)
Name: NF21527_low_47
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_47 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 38921246 - 38921466
Alignment:
| Q |
19 |
atcctatccatcctagtaacaaaacttaagcatgagaagtactacgttgtaacgtcatatcattggtcttctttatgcctaagcagactgcaaacttttt |
118 |
Q |
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| T |
38921246 |
atcctatcgatcctggtaacaaaacttaagcatgagaagtactacgttgtaacgtcacatcattggtcttctttatgcgtaagcagcctgcaaacttttt |
38921345 |
T |
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| Q |
119 |
ctgcatttcattaagacatgatgtactcttatttccaattgttcttctttataattcagacaatgaccattacactcatttctctcgtatctcatccatc |
218 |
Q |
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| T |
38921346 |
atgcatttcattaagacatgatgtactcttatttccaattgttcttatttataattcagacaatgaccattacactcatttctctcgtatctcatccatc |
38921445 |
T |
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| Q |
219 |
ttttttaatgagtaaaccctc |
239 |
Q |
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| T |
38921446 |
ttttttaatgagtaaaccctc |
38921466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 39017329 - 39017179
Alignment:
| Q |
78 |
tcattggtcttctttatgcctaagcagactgcaaactttttctgcatttcattaagacatgatgtactcttatttccaattgttcttctttataattcag |
177 |
Q |
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||||||||||||| ||||| |||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39017329 |
tcattggtcttctctatgcgtaagcaacctgcaaactttttctgcatttcatcaaaacatgatgtactcttatttccaattgttcttctttataattcag |
39017230 |
T |
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| Q |
178 |
acaatgaccattacactcatttctctcgtatctcatccatcttttttaatg |
228 |
Q |
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| T |
39017229 |
acaatgaccattacactcatttctctcatatctcattcatcttttttaatg |
39017179 |
T |
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