View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_48 (Length: 238)
Name: NF21527_low_48
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_48 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 23433436 - 23433653
Alignment:
| Q |
19 |
agtctactgcatcaccgaatcttgctgaatgaatgtgatgatgtttgtgcttattgtacttgagaaataggagatagagatcacaacatttctgacttgc |
118 |
Q |
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| T |
23433436 |
agtccactgcatcactgaatcttattgagtgaatgtgatgatgtt-gtgcttattgtacttgagaaacaaaagaaagagatcacaacatttctgacttgt |
23433534 |
T |
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| Q |
119 |
attattcttgtgaccctcttagcaagtgcctcnnnnnnngacctgtccaatatgttgtttcagcacaaagttattgcattacaccgggaatcatgagaat |
218 |
Q |
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| T |
23433535 |
attattcttgtgaccctcttaacaagttcctcaaaaaaagacctgtccaatatgttgtttcagcacaaagttattgcaataggcagggaatcatgagaa- |
23433633 |
T |
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| Q |
219 |
tttaaaacaattatttattt |
238 |
Q |
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| T |
23433634 |
tttaaaacaattattcattt |
23433653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 23461305 - 23461489
Alignment:
| Q |
19 |
agtctactgcatcaccgaatcttgctgaatgaatgtgatgatgtttgtgcttattgtacttgagaaataggagatagagatcacaacatttctgacttgc |
118 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||||| |||||| |||||| |||| ||||| |||||| |
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| T |
23461305 |
agtctactgcatcaccgaatctttctgaatgaatgcgatgatgtt-gtgcttattgtatttgagaaacaggagaaagagattacaatatttccgacttgt |
23461403 |
T |
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| Q |
119 |
attattcttgtgaccctcttagcaagtgcctcnnnnnnngacctgtccaatatgttgtttcagcacaaagttattgcattacaccg |
204 |
Q |
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| T |
23461404 |
attattcttttgaccctcttagcaagtgcctcaaaaaaagacctgcccaatatgttgtttcagcataaagttattgcaatacaccg |
23461489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 23476652 - 23476715
Alignment:
| Q |
87 |
aggagatagagatcacaacatttctgacttgcattattcttgtgaccctcttagcaagtgcctc |
150 |
Q |
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| T |
23476652 |
aggagaaagagatcacaacatttctgacttgtattattcttttgaccctcttagcaagtgcctc |
23476715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 23350101 - 23350198
Alignment:
| Q |
105 |
catttctgacttgcattattcttgtgaccctcttagcaagtgcctcnnnnnnngacctgtccaat-atgttgtttcagcacaaagttattgcattaca |
201 |
Q |
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| T |
23350101 |
catttctgacttgtattattcttgcgaccctcttaacaagtgcctcaaaaaaagacctgtccaataatgttgtttcagcacaaagtaattgcaataca |
23350198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 23400322 - 23400413
Alignment:
| Q |
113 |
acttgcattattcttgtgaccctcttagcaagtgcctcnnnnnnngacctgtccaatatgttgtttcagcacaaagttattgcattacaccg |
204 |
Q |
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| T |
23400322 |
acttgtattattcttgtgaccctcttagcaagtgcctcaacaaaagacctgcccaatatgttttttgagcacaaagttattacaatacaccg |
23400413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 23476733 - 23476766
Alignment:
| Q |
205 |
ggaatcatgagaattttaaaacaattatttattt |
238 |
Q |
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| T |
23476733 |
ggaatcatgagaattttaaaacaattattcattt |
23476766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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