View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_50 (Length: 234)
Name: NF21527_low_50
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_50 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 45637567 - 45637790
Alignment:
| Q |
1 |
ctgcagttgcaatcagcagcagtggtatgtcagcagaagctaatggcggtaaacctttacgtgtggcagcgaataacaacaacaacaactctggtatgaa |
100 |
Q |
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| T |
45637567 |
ctgcagttgcaatcagcagcagtggtatgtcagcagaagctaatggcagcagacctttacgtgcggcagcgaataacaacaacaacaactctggtatgaa |
45637666 |
T |
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| Q |
101 |
cagtcgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttatggttcatcctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaac |
200 |
Q |
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| T |
45637667 |
cagtcgtaatgtgc----------agcagctgtgcgtgttgtttatggttcatcctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaac |
45637756 |
T |
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| Q |
201 |
atcgatgccgcattttcaaatgagctgaacatca |
234 |
Q |
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| T |
45637757 |
attgatgtcgcattttcaaatgagctgaacatca |
45637790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 8274180 - 8274413
Alignment:
| Q |
1 |
ctgcagttgcaatcagcagcagtggtatgtcagcagaagctaatggcggtaaacctttacgtgtggcagcgaataacaacaacaacaactctggtatgaa |
100 |
Q |
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||||| |||||||||||||||| ||||||||||||| |||| ||||| | | |||| ||||| |||||||||||||||||||| ||||| || |||||| |
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| T |
8274180 |
ctgcaattgcaatcagcagcagcggtatgtcagcagcagctgatggcagcagtccttcacgtgcggcagcgaataacaacaacaccaactgtgatatgaa |
8274279 |
T |
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| Q |
101 |
cagtcgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttatggttcatcctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaac |
200 |
Q |
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| T |
8274280 |
cagacgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttctggttcgtccttcttgacatggcagaggcctaaccaaggtagattcaagtgtaac |
8274379 |
T |
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| Q |
201 |
atcgatgccgcattttcaaatgagctgaacatca |
234 |
Q |
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| T |
8274380 |
atcgatgccgcattttctaatgagctgaacatca |
8274413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 41343783 - 41343951
Alignment:
| Q |
66 |
gcagcgaataacaacaacaacaactctggtatgaacagtcgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttatggttcatcctctttgtcat |
165 |
Q |
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||||||||||||||||||| ||| | || || ||||| ||||||| || |||| |||||||| ||||||| |||| |||||| ||| ||| | | |
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| T |
41343783 |
gcagcgaataacaacaacaccaattatgatacgaacatgcgtagtgcgctgccagatgcagcagttgtgcgtattgttcttggttcgtccgtcttgactt |
41343882 |
T |
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| Q |
166 |
ggcagaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatca |
234 |
Q |
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| T |
41343883 |
ggcagaggcctaaccaaggaagatttaagtgtaacatcgatgccgctttttctaaagagttgaatatca |
41343951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 11152634 - 11152555
Alignment:
| Q |
155 |
ctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatca |
234 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||| |||||| |||| |||| |
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| T |
11152634 |
ctctttgtcatggcagaggcctcaccaaggtagagtcaagtgtaacgtcgatgccacattttcgaatgagttgaatatca |
11152555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 8859288 - 8859367
Alignment:
| Q |
155 |
ctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatca |
234 |
Q |
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||||| |||||||||||||||| |||||| |||| | |||||||| | |||||| ||||||| |||||| |||| |||| |
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| T |
8859288 |
ctcttcgtcatggcagaggcctcaccaagatagagttaagtgtaatgttgatgccacattttcgaatgagttgaatatca |
8859367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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