View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_52 (Length: 227)
Name: NF21527_low_52
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_52 |
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| [»] scaffold0522 (1 HSPs) |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11312771 - 11312549
Alignment:
| Q |
1 |
cgaaggcttaaaagcatcaagttcttgaagaggtgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagtatcaacaatgctaaa |
100 |
Q |
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| T |
11312771 |
cgaaggcttaaaagcatcaagttcttgaagagttgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagcatcaacaatgctaaa |
11312672 |
T |
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| Q |
101 |
aaatttcccatttttctatgtaagacgatgtaaccttgaannnnnnnnnnnnnnnntggaaatgatgttggtgttgggggatgttgtgaaaaagtgatca |
200 |
Q |
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| T |
11312671 |
aaatttcccatttttctatgtaagacgatgtaaccttgaaagagagagagagagagtggaaatgatgttggtgttgggggatgttgtgaaaaagtgatta |
11312572 |
T |
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| Q |
201 |
tgagagttctttatttataggag |
223 |
Q |
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|||| |||||||||||||||||| |
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| T |
11312571 |
tgagggttctttatttataggag |
11312549 |
T |
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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 21471585 - 21471492
Alignment:
| Q |
8 |
ttaaaagcatcaagttcttgaagaggtgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagtatcaacaatgctaaaa |
101 |
Q |
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| T |
21471585 |
ttaaaaccatcaagttcgtaaagagctgtttcaaactcttcagcaaatgaagtgaaaaatggtagttggagtaaaagtagcaacagtgcaaaaa |
21471492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 1108 - 1192
Alignment:
| Q |
8 |
ttaaaagcatcaagttcttgaagaggtgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagtatcaaca |
92 |
Q |
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| T |
1108 |
ttaaaaccatcaagttcgtaaagagctgtgtcaaactcttcagcaaatgaagtgaaaaatgctagttggagtaagagtagcaaca |
1192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 3919 - 3826
Alignment:
| Q |
8 |
ttaaaagcatcaagttcttgaagaggtgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagtatcaacaatgctaaaa |
101 |
Q |
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| T |
3919 |
ttaaaaccatcaagttcgtaaagagctgtatcaaactcttcagtaaatgaagtgaaaaatgctagttggagtaggagtagcaacagtgcaaaaa |
3826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 19262750 - 19262847
Alignment:
| Q |
2 |
gaaggcttaaaagcatcaagttcttgaagaggtgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagtatcaacaatgctaa |
99 |
Q |
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|||||||||||| ||| | ||| | ||||| ||||||| |||||| ||||||| |||||||||||||||||| |||| ||||| |||||||||||| |
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| T |
19262750 |
gaaggcttaaaaccataaggtttgtaaagagcggtttcaagctcttccgcaaatgtagtgaaaaaggttagttgaagtaagagtaacaacaatgctaa |
19262847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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